Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC27.74■■■□□ 2.03
CACNA1FO60840 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CACNA1FO60840 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CACNA1FO60840 ME2-208ENST00000638937 2471 ntTSL 5 BASIC27.74■■■□□ 2.03
CACNA1FO60840 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CACNA1FO60840 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CACNA1FO60840 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC27.73■■■□□ 2.03
CACNA1FO60840 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC27.73■■■□□ 2.03
CACNA1FO60840 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC27.73■■■□□ 2.03
CACNA1FO60840 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC27.73■■■□□ 2.03
CACNA1FO60840 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
CACNA1FO60840 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CACNA1FO60840 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CACNA1FO60840 PLD4-205ENST00000553861 667 ntTSL 2 BASIC27.73■■■□□ 2.03
CACNA1FO60840 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
CACNA1FO60840 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC27.72■■■□□ 2.03
CACNA1FO60840 ESRRAP2-201ENST00000418437 1549 ntBASIC27.72■■■□□ 2.03
CACNA1FO60840 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
CACNA1FO60840 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC27.72■■■□□ 2.03
CACNA1FO60840 RAB43-208ENST00000615093 783 ntTSL 5 BASIC27.72■■■□□ 2.03
CACNA1FO60840 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC27.72■■■□□ 2.03
CACNA1FO60840 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
CACNA1FO60840 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC27.72■■■□□ 2.03
CACNA1FO60840 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
CACNA1FO60840 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC27.72■■■□□ 2.03
CACNA1FO60840 CASK-201ENST00000378154 2494 ntTSL 5 BASIC27.72■■■□□ 2.03
CACNA1FO60840 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC27.71■■■□□ 2.03
CACNA1FO60840 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC27.71■■■□□ 2.03
CACNA1FO60840 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
CACNA1FO60840 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC27.71■■■□□ 2.03
CACNA1FO60840 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC27.71■■■□□ 2.03
CACNA1FO60840 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC27.71■■■□□ 2.03
CACNA1FO60840 MIR6821-201ENST00000617625 74 ntBASIC27.71■■■□□ 2.03
CACNA1FO60840 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
CACNA1FO60840 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.03
CACNA1FO60840 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC27.7■■■□□ 2.03
CACNA1FO60840 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC27.7■■■□□ 2.03
CACNA1FO60840 AC087623.3-201ENST00000607047 1098 ntBASIC27.7■■■□□ 2.03
CACNA1FO60840 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
CACNA1FO60840 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
CACNA1FO60840 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC27.7■■■□□ 2.02
CACNA1FO60840 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC27.7■■■□□ 2.02
CACNA1FO60840 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC27.69■■■□□ 2.02
CACNA1FO60840 AC139530.1-201ENST00000575312 1977 ntBASIC27.69■■■□□ 2.02
CACNA1FO60840 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
CACNA1FO60840 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC27.69■■■□□ 2.02
CACNA1FO60840 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
CACNA1FO60840 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
CACNA1FO60840 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
CACNA1FO60840 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC27.69■■■□□ 2.02
CACNA1FO60840 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC27.69■■■□□ 2.02
CACNA1FO60840 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC27.69■■■□□ 2.02
CACNA1FO60840 AC105233.4-201ENST00000642045 216 ntBASIC27.69■■■□□ 2.02
CACNA1FO60840 C9orf163-202ENST00000624034 2573 ntBASIC27.69■■■□□ 2.02
CACNA1FO60840 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC27.69■■■□□ 2.02
CACNA1FO60840 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC27.69■■■□□ 2.02
CACNA1FO60840 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC27.68■■■□□ 2.02
CACNA1FO60840 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
CACNA1FO60840 TERF1P2-201ENST00000583350 1212 ntBASIC27.68■■■□□ 2.02
CACNA1FO60840 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC27.68■■■□□ 2.02
CACNA1FO60840 SP2-202ENST00000613139 908 ntTSL 5 BASIC27.68■■■□□ 2.02
CACNA1FO60840 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC27.68■■■□□ 2.02
CACNA1FO60840 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
CACNA1FO60840 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
CACNA1FO60840 MIR935-201ENST00000401179 91 ntBASIC27.68■■■□□ 2.02
CACNA1FO60840 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC27.68■■■□□ 2.02
CACNA1FO60840 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
CACNA1FO60840 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
CACNA1FO60840 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
CACNA1FO60840 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CACNA1FO60840 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC27.67■■■□□ 2.02
CACNA1FO60840 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC27.67■■■□□ 2.02
CACNA1FO60840 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CACNA1FO60840 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC27.67■■■□□ 2.02
CACNA1FO60840 BX005040.4-201ENST00000637145 1518 ntBASIC27.67■■■□□ 2.02
CACNA1FO60840 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
CACNA1FO60840 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC27.67■■■□□ 2.02
CACNA1FO60840 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CACNA1FO60840 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
CACNA1FO60840 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
CACNA1FO60840 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
CACNA1FO60840 AC068473.5-201ENST00000616428 2072 ntBASIC27.66■■■□□ 2.02
CACNA1FO60840 YBX1P1-201ENST00000445822 960 ntBASIC27.66■■■□□ 2.02
CACNA1FO60840 DUX4L2-201ENST00000561772 1275 ntBASIC27.66■■■□□ 2.02
CACNA1FO60840 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC27.66■■■□□ 2.02
CACNA1FO60840 DUX4L6-201ENST00000626483 1275 ntBASIC27.66■■■□□ 2.02
CACNA1FO60840 DUX4L1-201ENST00000627662 1275 ntBASIC27.66■■■□□ 2.02
CACNA1FO60840 DUX4L8-201ENST00000629013 1275 ntBASIC27.66■■■□□ 2.02
CACNA1FO60840 DUX4L3-201ENST00000630187 1275 ntBASIC27.66■■■□□ 2.02
CACNA1FO60840 DUX4L7-201ENST00000630678 1275 ntBASIC27.66■■■□□ 2.02
CACNA1FO60840 DUX4L5-201ENST00000630834 1275 ntBASIC27.66■■■□□ 2.02
CACNA1FO60840 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
CACNA1FO60840 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
CACNA1FO60840 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC27.66■■■□□ 2.02
CACNA1FO60840 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
CACNA1FO60840 OR7E47P-201ENST00000546390 1422 ntBASIC27.66■■■□□ 2.02
CACNA1FO60840 AC005224.4-201ENST00000583262 1652 ntBASIC27.65■■■□□ 2.02
CACNA1FO60840 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CACNA1FO60840 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC27.65■■■□□ 2.02
CACNA1FO60840 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms