Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
MSH4O15457 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
MSH4O15457 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
MSH4O15457 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC24.63■■□□□ 1.53
MSH4O15457 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC24.63■■□□□ 1.53
MSH4O15457 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
MSH4O15457 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
MSH4O15457 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
MSH4O15457 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
MSH4O15457 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
MSH4O15457 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC24.62■■□□□ 1.53
MSH4O15457 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
MSH4O15457 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
MSH4O15457 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
MSH4O15457 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC24.62■■□□□ 1.53
MSH4O15457 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC24.62■■□□□ 1.53
MSH4O15457 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
MSH4O15457 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
MSH4O15457 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC24.62■■□□□ 1.53
MSH4O15457 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
MSH4O15457 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.61■■□□□ 1.53
MSH4O15457 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH4O15457 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH4O15457 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
MSH4O15457 AC012414.1-201ENST00000556676 535 ntBASIC24.61■■□□□ 1.53
MSH4O15457 AC105233.4-201ENST00000642045 216 ntBASIC24.61■■□□□ 1.53
MSH4O15457 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC24.61■■□□□ 1.53
MSH4O15457 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH4O15457 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH4O15457 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH4O15457 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH4O15457 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC24.6■■□□□ 1.53
MSH4O15457 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC24.6■■□□□ 1.53
MSH4O15457 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC24.6■■□□□ 1.53
MSH4O15457 MIR6084-201ENST00000622012 110 ntBASIC24.6■■□□□ 1.53
MSH4O15457 AL358852.1-201ENST00000623174 1268 ntBASIC24.6■■□□□ 1.53
MSH4O15457 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC24.6■■□□□ 1.53
MSH4O15457 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH4O15457 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
MSH4O15457 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH4O15457 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
MSH4O15457 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
MSH4O15457 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
MSH4O15457 NME4-202ENST00000382940 766 ntTSL 3 BASIC24.59■■□□□ 1.53
MSH4O15457 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.59■■□□□ 1.53
MSH4O15457 NME4-211ENST00000620944 1193 ntTSL 2 BASIC24.59■■□□□ 1.53
MSH4O15457 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
MSH4O15457 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
MSH4O15457 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
MSH4O15457 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC24.58■■□□□ 1.53
MSH4O15457 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
MSH4O15457 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
MSH4O15457 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
MSH4O15457 AC026271.2-201ENST00000428091 497 ntBASIC24.58■■□□□ 1.53
MSH4O15457 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.58■■□□□ 1.53
MSH4O15457 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC24.58■■□□□ 1.53
MSH4O15457 SMUG1P1-201ENST00000590640 811 ntBASIC24.58■■□□□ 1.53
MSH4O15457 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC24.58■■□□□ 1.52
MSH4O15457 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC24.58■■□□□ 1.52
MSH4O15457 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.52
MSH4O15457 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
MSH4O15457 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC24.58■■□□□ 1.52
MSH4O15457 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
MSH4O15457 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
MSH4O15457 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
MSH4O15457 AK1-201ENST00000223836 736 ntTSL 3 BASIC24.57■■□□□ 1.52
MSH4O15457 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
MSH4O15457 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
MSH4O15457 RARRES2P6-201ENST00000567333 442 ntBASIC24.57■■□□□ 1.52
MSH4O15457 AL354811.1-201ENST00000610286 706 ntBASIC24.57■■□□□ 1.52
MSH4O15457 SP2-202ENST00000613139 908 ntTSL 5 BASIC24.57■■□□□ 1.52
MSH4O15457 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC24.57■■□□□ 1.52
MSH4O15457 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
MSH4O15457 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
MSH4O15457 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
MSH4O15457 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.56■■□□□ 1.52
MSH4O15457 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
MSH4O15457 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC24.56■■□□□ 1.52
MSH4O15457 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC24.56■■□□□ 1.52
MSH4O15457 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
MSH4O15457 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
MSH4O15457 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC24.56■■□□□ 1.52
MSH4O15457 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.56■■□□□ 1.52
MSH4O15457 AC079089.2-201ENST00000531211 1277 ntBASIC24.56■■□□□ 1.52
MSH4O15457 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC24.56■■□□□ 1.52
MSH4O15457 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC24.56■■□□□ 1.52
MSH4O15457 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
MSH4O15457 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
MSH4O15457 AC137767.1-201ENST00000602918 1920 ntBASIC24.56■■□□□ 1.52
MSH4O15457 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC24.56■■□□□ 1.52
MSH4O15457 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC24.55■■□□□ 1.52
MSH4O15457 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
MSH4O15457 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
MSH4O15457 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
MSH4O15457 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
MSH4O15457 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
MSH4O15457 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
MSH4O15457 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC24.55■■□□□ 1.52
MSH4O15457 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC24.55■■□□□ 1.52
MSH4O15457 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms