Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBFD1O14562 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBFD1O14562 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBFD1O14562 UNC93B8-201ENST00000511903 705 ntBASIC21.22■□□□□ 0.99
UBFD1O14562 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.22■□□□□ 0.99
UBFD1O14562 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.22■□□□□ 0.99
UBFD1O14562 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
UBFD1O14562 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.22■□□□□ 0.99
UBFD1O14562 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBFD1O14562 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBFD1O14562 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBFD1O14562 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBFD1O14562 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
UBFD1O14562 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
UBFD1O14562 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBFD1O14562 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBFD1O14562 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBFD1O14562 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.21■□□□□ 0.99
UBFD1O14562 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBFD1O14562 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBFD1O14562 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UBFD1O14562 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBFD1O14562 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UBFD1O14562 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UBFD1O14562 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBFD1O14562 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UBFD1O14562 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
UBFD1O14562 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBFD1O14562 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.2■□□□□ 0.98
UBFD1O14562 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBFD1O14562 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBFD1O14562 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
UBFD1O14562 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
UBFD1O14562 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBFD1O14562 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
UBFD1O14562 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBFD1O14562 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.2■□□□□ 0.98
UBFD1O14562 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.2■□□□□ 0.98
UBFD1O14562 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.2■□□□□ 0.98
UBFD1O14562 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
UBFD1O14562 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
UBFD1O14562 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBFD1O14562 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
UBFD1O14562 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.2■□□□□ 0.98
UBFD1O14562 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBFD1O14562 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.19■□□□□ 0.98
UBFD1O14562 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBFD1O14562 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.19■□□□□ 0.98
UBFD1O14562 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBFD1O14562 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBFD1O14562 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
UBFD1O14562 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
UBFD1O14562 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
UBFD1O14562 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBFD1O14562 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.19■□□□□ 0.98
UBFD1O14562 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
UBFD1O14562 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
UBFD1O14562 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.18■□□□□ 0.98
UBFD1O14562 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.18■□□□□ 0.98
UBFD1O14562 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBFD1O14562 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 MIR6724-1-201ENST00000616420 92 ntBASIC21.17■□□□□ 0.98
UBFD1O14562 MIR6724-2-201ENST00000616483 92 ntBASIC21.17■□□□□ 0.98
UBFD1O14562 MIR6724-4-201ENST00000617390 92 ntBASIC21.17■□□□□ 0.98
UBFD1O14562 MIR6724-3-201ENST00000622482 92 ntBASIC21.17■□□□□ 0.98
UBFD1O14562 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.17■□□□□ 0.98
UBFD1O14562 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBFD1O14562 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
UBFD1O14562 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.16■□□□□ 0.98
UBFD1O14562 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBFD1O14562 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
UBFD1O14562 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBFD1O14562 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.16■□□□□ 0.98
UBFD1O14562 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
UBFD1O14562 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.16■□□□□ 0.98
UBFD1O14562 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.16■□□□□ 0.98
UBFD1O14562 AL117332.1-201ENST00000622628 974 ntBASIC21.16■□□□□ 0.98
UBFD1O14562 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
UBFD1O14562 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms