Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KDM3AQ9Y4C1 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 JTB-203ENST00000368589 1216 ntTSL 2 BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 OR2I1P-207ENST00000453522 948 ntBASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 AC104564.3-201ENST00000582367 638 ntBASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 ESRRAP2-201ENST00000418437 1549 ntBASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
KDM3AQ9Y4C1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 GRAMD4P2-201ENST00000423297 1097 ntBASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 AC087623.3-201ENST00000607047 1098 ntBASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 AC092666.2-201ENST00000613287 246 ntBASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 LINC01960-201ENST00000563759 1884 ntBASIC24.68■■□□□ 1.54
KDM3AQ9Y4C1 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
KDM3AQ9Y4C1 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KDM3AQ9Y4C1 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC24.67■■□□□ 1.54
KDM3AQ9Y4C1 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
KDM3AQ9Y4C1 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KDM3AQ9Y4C1 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
KDM3AQ9Y4C1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
KDM3AQ9Y4C1 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KDM3AQ9Y4C1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC24.67■■□□□ 1.54
KDM3AQ9Y4C1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KDM3AQ9Y4C1 GALC-202ENST00000393568 2054 ntTSL 2 BASIC24.67■■□□□ 1.54
KDM3AQ9Y4C1 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 SLC47A1P1-202ENST00000449666 945 ntBASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 AC133561.1-201ENST00000568600 2415 ntBASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.66■■□□□ 1.54
KDM3AQ9Y4C1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
KDM3AQ9Y4C1 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
KDM3AQ9Y4C1 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
KDM3AQ9Y4C1 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
KDM3AQ9Y4C1 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC24.65■■□□□ 1.54
KDM3AQ9Y4C1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC24.65■■□□□ 1.54
KDM3AQ9Y4C1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.65■■□□□ 1.54
KDM3AQ9Y4C1 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
KDM3AQ9Y4C1 AC126544.1-201ENST00000580842 1059 ntBASIC24.64■■□□□ 1.54
KDM3AQ9Y4C1 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC24.64■■□□□ 1.54
KDM3AQ9Y4C1 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
KDM3AQ9Y4C1 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC24.64■■□□□ 1.54
KDM3AQ9Y4C1 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.53
KDM3AQ9Y4C1 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC24.64■■□□□ 1.53
KDM3AQ9Y4C1 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
KDM3AQ9Y4C1 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
KDM3AQ9Y4C1 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC24.63■■□□□ 1.53
KDM3AQ9Y4C1 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC24.63■■□□□ 1.53
KDM3AQ9Y4C1 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
KDM3AQ9Y4C1 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC24.63■■□□□ 1.53
KDM3AQ9Y4C1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.53
KDM3AQ9Y4C1 AK1-201ENST00000223836 736 ntTSL 3 BASIC24.62■■□□□ 1.53
KDM3AQ9Y4C1 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
KDM3AQ9Y4C1 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC24.62■■□□□ 1.53
KDM3AQ9Y4C1 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC24.62■■□□□ 1.53
KDM3AQ9Y4C1 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
KDM3AQ9Y4C1 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
KDM3AQ9Y4C1 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
KDM3AQ9Y4C1 STX4-202ENST00000394998 1498 ntTSL 2 BASIC24.62■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms