Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC009086.3-201ENST00000623486 1008 ntBASIC17.7■□□□□ 0.42
FOXA2Q9Y261 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA2Q9Y261 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 DUX4L4-201ENST00000566884 1269 ntBASIC17.68■□□□□ 0.42
FOXA2Q9Y261 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA2Q9Y261 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 ASB1-202ENST00000409297 878 ntTSL 5 BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 AC009102.2-201ENST00000606772 1639 ntBASIC17.67■□□□□ 0.42
FOXA2Q9Y261 BID-212ENST00000614949 1988 ntTSL 5 BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
FOXA2Q9Y261 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA2Q9Y261 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 LINC01960-201ENST00000563759 1884 ntBASIC17.65■□□□□ 0.42
FOXA2Q9Y261 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA2Q9Y261 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
FOXA2Q9Y261 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
FOXA2Q9Y261 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA2Q9Y261 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA2Q9Y261 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC17.64■□□□□ 0.41
FOXA2Q9Y261 AC131281.2-201ENST00000520478 145 ntBASIC17.64■□□□□ 0.41
FOXA2Q9Y261 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA2Q9Y261 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA2Q9Y261 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA2Q9Y261 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA2Q9Y261 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA2Q9Y261 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.64■□□□□ 0.41
FOXA2Q9Y261 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.64■□□□□ 0.41
FOXA2Q9Y261 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms