Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
VPS29Q9UBQ0 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21■□□□□ 0.95
VPS29Q9UBQ0 AC099791.2-201ENST00000605725 427 ntBASIC21■□□□□ 0.95
VPS29Q9UBQ0 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
VPS29Q9UBQ0 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS29Q9UBQ0 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21■□□□□ 0.95
VPS29Q9UBQ0 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 AL356441.2-201ENST00000443009 864 ntBASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS29Q9UBQ0 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 AC137767.1-201ENST00000602918 1920 ntBASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 AC006455.2-201ENST00000429931 906 ntBASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 AC133637.1-201ENST00000624115 1537 ntBASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS29Q9UBQ0 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 SRD5A1P1-201ENST00000442297 786 ntBASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 pRNA.6-201ENST00000610482 90 ntBASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 CA15P2-201ENST00000611168 834 ntBASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 pRNA.5-201ENST00000612139 90 ntBASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 pRNA.11-201ENST00000618423 90 ntBASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 pRNA.13-201ENST00000619112 90 ntBASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS29Q9UBQ0 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS29Q9UBQ0 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS29Q9UBQ0 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS29Q9UBQ0 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
VPS29Q9UBQ0 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS29Q9UBQ0 C11orf96-202ENST00000528572 1834 ntBASIC20.96■□□□□ 0.95
VPS29Q9UBQ0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS29Q9UBQ0 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
VPS29Q9UBQ0 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 AL512631.2-201ENST00000604634 923 ntBASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 AC092171.4-201ENST00000609130 632 ntBASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS29Q9UBQ0 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS29Q9UBQ0 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS29Q9UBQ0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS29Q9UBQ0 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS29Q9UBQ0 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS29Q9UBQ0 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
VPS29Q9UBQ0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS29Q9UBQ0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS29Q9UBQ0 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS29Q9UBQ0 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS29Q9UBQ0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS29Q9UBQ0 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS29Q9UBQ0 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS29Q9UBQ0 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
VPS29Q9UBQ0 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS29Q9UBQ0 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.93■□□□□ 0.94
VPS29Q9UBQ0 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 405.1 ms