Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDH9Q9HC56 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
PCDH9Q9HC56 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.65■■□□□ 1.22
PCDH9Q9HC56 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PCDH9Q9HC56 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PCDH9Q9HC56 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC22.65■■□□□ 1.22
PCDH9Q9HC56 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PCDH9Q9HC56 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PCDH9Q9HC56 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
PCDH9Q9HC56 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
PCDH9Q9HC56 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PCDH9Q9HC56 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.64■■□□□ 1.21
PCDH9Q9HC56 AC131281.2-201ENST00000520478 145 ntBASIC22.64■■□□□ 1.21
PCDH9Q9HC56 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22.64■■□□□ 1.21
PCDH9Q9HC56 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
PCDH9Q9HC56 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
PCDH9Q9HC56 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.63■■□□□ 1.21
PCDH9Q9HC56 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PCDH9Q9HC56 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.62■■□□□ 1.21
PCDH9Q9HC56 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDH9Q9HC56 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
PCDH9Q9HC56 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC22.62■■□□□ 1.21
PCDH9Q9HC56 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PCDH9Q9HC56 MIR4466-201ENST00000606121 54 ntBASIC22.62■■□□□ 1.21
PCDH9Q9HC56 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
PCDH9Q9HC56 LINC01960-201ENST00000563759 1884 ntBASIC22.62■■□□□ 1.21
PCDH9Q9HC56 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.62■■□□□ 1.21
PCDH9Q9HC56 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.62■■□□□ 1.21
PCDH9Q9HC56 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PCDH9Q9HC56 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PCDH9Q9HC56 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PCDH9Q9HC56 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PCDH9Q9HC56 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PCDH9Q9HC56 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
PCDH9Q9HC56 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PCDH9Q9HC56 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC22.61■■□□□ 1.21
PCDH9Q9HC56 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.61■■□□□ 1.21
PCDH9Q9HC56 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDH9Q9HC56 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PCDH9Q9HC56 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.58■■□□□ 1.21
PCDH9Q9HC56 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PCDH9Q9HC56 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
PCDH9Q9HC56 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.21
PCDH9Q9HC56 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
PCDH9Q9HC56 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC22.58■■□□□ 1.21
PCDH9Q9HC56 SRD5A1P1-201ENST00000442297 786 ntBASIC22.58■■□□□ 1.21
PCDH9Q9HC56 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
PCDH9Q9HC56 BID-212ENST00000614949 1988 ntTSL 5 BASIC22.58■■□□□ 1.2
PCDH9Q9HC56 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDH9Q9HC56 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
PCDH9Q9HC56 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.57■■□□□ 1.2
PCDH9Q9HC56 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.57■■□□□ 1.2
PCDH9Q9HC56 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.57■■□□□ 1.2
PCDH9Q9HC56 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
PCDH9Q9HC56 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDH9Q9HC56 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC22.57■■□□□ 1.2
PCDH9Q9HC56 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDH9Q9HC56 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDH9Q9HC56 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDH9Q9HC56 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
PCDH9Q9HC56 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDH9Q9HC56 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC22.56■■□□□ 1.2
PCDH9Q9HC56 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC22.56■■□□□ 1.2
PCDH9Q9HC56 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms