Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPAS1Q99742 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.96■□□□□ 0.79
NPAS1Q99742 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NPAS1Q99742 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NPAS1Q99742 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.96■□□□□ 0.79
NPAS1Q99742 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPAS1Q99742 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPAS1Q99742 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
NPAS1Q99742 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.95■□□□□ 0.78
NPAS1Q99742 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.95■□□□□ 0.78
NPAS1Q99742 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPAS1Q99742 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPAS1Q99742 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPAS1Q99742 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
NPAS1Q99742 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NPAS1Q99742 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NPAS1Q99742 AP001330.3-201ENST00000520123 633 ntBASIC19.94■□□□□ 0.78
NPAS1Q99742 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
NPAS1Q99742 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPAS1Q99742 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.94■□□□□ 0.78
NPAS1Q99742 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
NPAS1Q99742 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPAS1Q99742 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
NPAS1Q99742 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.93■□□□□ 0.78
NPAS1Q99742 OR2I1P-207ENST00000453522 948 ntBASIC19.93■□□□□ 0.78
NPAS1Q99742 SUDS3P1-201ENST00000505831 966 ntBASIC19.93■□□□□ 0.78
NPAS1Q99742 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.93■□□□□ 0.78
NPAS1Q99742 AC005837.3-201ENST00000612163 286 ntBASIC19.93■□□□□ 0.78
NPAS1Q99742 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPAS1Q99742 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPAS1Q99742 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPAS1Q99742 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
NPAS1Q99742 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.92■□□□□ 0.78
NPAS1Q99742 AL024507.2-201ENST00000606070 2574 ntBASIC19.92■□□□□ 0.78
NPAS1Q99742 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPAS1Q99742 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPAS1Q99742 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPAS1Q99742 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPAS1Q99742 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPAS1Q99742 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPAS1Q99742 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.92■□□□□ 0.78
NPAS1Q99742 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
NPAS1Q99742 AF213884.3-201ENST00000563833 479 ntBASIC19.92■□□□□ 0.78
NPAS1Q99742 AC008764.7-201ENST00000593779 1081 ntBASIC19.92■□□□□ 0.78
NPAS1Q99742 AC087742.1-201ENST00000575880 1738 ntBASIC19.92■□□□□ 0.78
NPAS1Q99742 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NPAS1Q99742 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPAS1Q99742 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.92■□□□□ 0.78
NPAS1Q99742 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPAS1Q99742 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NPAS1Q99742 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
NPAS1Q99742 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPAS1Q99742 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.91■□□□□ 0.78
NPAS1Q99742 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPAS1Q99742 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPAS1Q99742 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPAS1Q99742 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPAS1Q99742 EDA-201ENST00000338901 1233 ntBASIC19.91■□□□□ 0.78
NPAS1Q99742 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
NPAS1Q99742 AC133561.4-201ENST00000566112 224 ntBASIC19.91■□□□□ 0.78
NPAS1Q99742 AL136967.2-201ENST00000623968 743 ntBASIC19.91■□□□□ 0.78
NPAS1Q99742 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
NPAS1Q99742 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPAS1Q99742 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPAS1Q99742 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.91■□□□□ 0.78
NPAS1Q99742 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.91■□□□□ 0.78
NPAS1Q99742 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPAS1Q99742 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPAS1Q99742 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPAS1Q99742 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
NPAS1Q99742 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPAS1Q99742 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPAS1Q99742 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPAS1Q99742 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPAS1Q99742 MIR939-201ENST00000401314 82 ntBASIC19.9■□□□□ 0.78
NPAS1Q99742 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
NPAS1Q99742 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPAS1Q99742 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.9■□□□□ 0.78
NPAS1Q99742 AL355001.2-201ENST00000620617 1191 ntBASIC19.9■□□□□ 0.78
NPAS1Q99742 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPAS1Q99742 LINC01960-201ENST00000563759 1884 ntBASIC19.9■□□□□ 0.78
NPAS1Q99742 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPAS1Q99742 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPAS1Q99742 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPAS1Q99742 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
NPAS1Q99742 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPAS1Q99742 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPAS1Q99742 AC099791.1-201ENST00000416440 715 ntBASIC19.89■□□□□ 0.77
NPAS1Q99742 BX842568.3-201ENST00000418104 571 ntBASIC19.89■□□□□ 0.77
NPAS1Q99742 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
NPAS1Q99742 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.89■□□□□ 0.77
NPAS1Q99742 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.89■□□□□ 0.77
NPAS1Q99742 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPAS1Q99742 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.89■□□□□ 0.77
NPAS1Q99742 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPAS1Q99742 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPAS1Q99742 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPAS1Q99742 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
NPAS1Q99742 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPAS1Q99742 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms