Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
USP54Q70EL1 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
USP54Q70EL1 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
USP54Q70EL1 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC29.66■■■□□ 2.34
USP54Q70EL1 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
USP54Q70EL1 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC29.65■■■□□ 2.34
USP54Q70EL1 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC29.65■■■□□ 2.34
USP54Q70EL1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC29.65■■■□□ 2.34
USP54Q70EL1 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USP54Q70EL1 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
USP54Q70EL1 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USP54Q70EL1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC29.65■■■□□ 2.34
USP54Q70EL1 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USP54Q70EL1 TK2-208ENST00000545043 1120 ntTSL 2 BASIC29.65■■■□□ 2.34
USP54Q70EL1 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC29.64■■■□□ 2.34
USP54Q70EL1 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
USP54Q70EL1 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
USP54Q70EL1 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
USP54Q70EL1 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC29.64■■■□□ 2.33
USP54Q70EL1 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC29.64■■■□□ 2.33
USP54Q70EL1 MIR663A-201ENST00000385250 93 ntBASIC29.63■■■□□ 2.33
USP54Q70EL1 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC29.63■■■□□ 2.33
USP54Q70EL1 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC29.63■■■□□ 2.33
USP54Q70EL1 AC080038.1-201ENST00000611274 1154 ntBASIC29.63■■■□□ 2.33
USP54Q70EL1 AC005224.4-201ENST00000583262 1652 ntBASIC29.63■■■□□ 2.33
USP54Q70EL1 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
USP54Q70EL1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC29.63■■■□□ 2.33
USP54Q70EL1 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC29.63■■■□□ 2.33
USP54Q70EL1 KRT19P1-201ENST00000405746 1186 ntBASIC29.63■■■□□ 2.33
USP54Q70EL1 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC29.63■■■□□ 2.33
USP54Q70EL1 DUSP8P3-201ENST00000399571 1760 ntBASIC29.62■■■□□ 2.33
USP54Q70EL1 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
USP54Q70EL1 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC29.62■■■□□ 2.33
USP54Q70EL1 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC29.62■■■□□ 2.33
USP54Q70EL1 ABCB10P4-201ENST00000566803 2184 ntBASIC29.62■■■□□ 2.33
USP54Q70EL1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
USP54Q70EL1 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC29.62■■■□□ 2.33
USP54Q70EL1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
USP54Q70EL1 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC29.62■■■□□ 2.33
USP54Q70EL1 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
USP54Q70EL1 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC29.62■■■□□ 2.33
USP54Q70EL1 AC092068.2-201ENST00000590491 1708 ntBASIC29.62■■■□□ 2.33
USP54Q70EL1 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
USP54Q70EL1 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
USP54Q70EL1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
USP54Q70EL1 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC29.61■■■□□ 2.33
USP54Q70EL1 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC29.61■■■□□ 2.33
USP54Q70EL1 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC29.61■■■□□ 2.33
USP54Q70EL1 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC29.61■■■□□ 2.33
USP54Q70EL1 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
USP54Q70EL1 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC29.61■■■□□ 2.33
USP54Q70EL1 KRT87P-202ENST00000534226 1464 ntBASIC29.61■■■□□ 2.33
USP54Q70EL1 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC29.61■■■□□ 2.33
USP54Q70EL1 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC29.61■■■□□ 2.33
USP54Q70EL1 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
USP54Q70EL1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC29.61■■■□□ 2.33
USP54Q70EL1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
USP54Q70EL1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC29.6■■■□□ 2.33
USP54Q70EL1 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
USP54Q70EL1 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
USP54Q70EL1 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
USP54Q70EL1 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
USP54Q70EL1 AC026185.1-201ENST00000445748 174 ntBASIC29.6■■■□□ 2.33
USP54Q70EL1 EMC9-206ENST00000560403 872 ntTSL 2 BASIC29.6■■■□□ 2.33
USP54Q70EL1 BID-214ENST00000617586 542 ntTSL 5 BASIC29.6■■■□□ 2.33
USP54Q70EL1 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
USP54Q70EL1 CROCCP5-201ENST00000436658 830 ntBASIC29.59■■■□□ 2.33
USP54Q70EL1 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC29.59■■■□□ 2.33
USP54Q70EL1 MFSD11-216ENST00000590393 1141 ntBASIC29.59■■■□□ 2.33
USP54Q70EL1 AC104771.1-201ENST00000603335 964 ntBASIC29.59■■■□□ 2.33
USP54Q70EL1 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC29.59■■■□□ 2.33
USP54Q70EL1 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC29.59■■■□□ 2.33
USP54Q70EL1 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC29.58■■■□□ 2.33
USP54Q70EL1 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC29.58■■■□□ 2.33
USP54Q70EL1 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
USP54Q70EL1 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
USP54Q70EL1 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
USP54Q70EL1 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
USP54Q70EL1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC29.57■■■□□ 2.32
USP54Q70EL1 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC29.57■■■□□ 2.32
USP54Q70EL1 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
USP54Q70EL1 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
USP54Q70EL1 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
USP54Q70EL1 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
USP54Q70EL1 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC29.56■■■□□ 2.32
USP54Q70EL1 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC29.56■■■□□ 2.32
USP54Q70EL1 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC29.56■■■□□ 2.32
USP54Q70EL1 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
USP54Q70EL1 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
USP54Q70EL1 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC29.56■■■□□ 2.32
USP54Q70EL1 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC29.56■■■□□ 2.32
USP54Q70EL1 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
USP54Q70EL1 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
USP54Q70EL1 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC29.55■■■□□ 2.32
USP54Q70EL1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC29.55■■■□□ 2.32
USP54Q70EL1 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC29.55■■■□□ 2.32
USP54Q70EL1 OXCT2P1-201ENST00000447263 1535 ntBASIC29.55■■■□□ 2.32
USP54Q70EL1 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
USP54Q70EL1 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
USP54Q70EL1 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms