Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 USP45-205ENST00000472914 1617 ntTSL 5 BASIC24.47■■□□□ 1.51
NKX3-2P78367 ESRRAP2-201ENST00000418437 1549 ntBASIC24.47■■□□□ 1.51
NKX3-2P78367 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
NKX3-2P78367 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
NKX3-2P78367 MDK-213ENST00000617138 635 ntTSL 2 BASIC24.47■■□□□ 1.51
NKX3-2P78367 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
NKX3-2P78367 AL353803.4-201ENST00000565882 1934 ntBASIC24.47■■□□□ 1.51
NKX3-2P78367 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
NKX3-2P78367 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
NKX3-2P78367 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.46■■□□□ 1.51
NKX3-2P78367 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC24.46■■□□□ 1.51
NKX3-2P78367 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
NKX3-2P78367 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC24.46■■□□□ 1.51
NKX3-2P78367 AC006970.2-201ENST00000450065 779 ntBASIC24.46■■□□□ 1.51
NKX3-2P78367 AC079140.4-201ENST00000507448 529 ntBASIC24.46■■□□□ 1.51
NKX3-2P78367 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC24.46■■□□□ 1.51
NKX3-2P78367 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC24.46■■□□□ 1.51
NKX3-2P78367 AL109923.1-201ENST00000618799 583 ntBASIC24.46■■□□□ 1.51
NKX3-2P78367 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC24.46■■□□□ 1.51
NKX3-2P78367 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC24.45■■□□□ 1.51
NKX3-2P78367 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC24.45■■□□□ 1.51
NKX3-2P78367 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC24.45■■□□□ 1.5
NKX3-2P78367 SPI1-203ENST00000533030 661 ntTSL 2 BASIC24.45■■□□□ 1.5
NKX3-2P78367 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NKX3-2P78367 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
NKX3-2P78367 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC24.44■■□□□ 1.5
NKX3-2P78367 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NKX3-2P78367 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
NKX3-2P78367 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NKX3-2P78367 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NKX3-2P78367 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NKX3-2P78367 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
NKX3-2P78367 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC24.43■■□□□ 1.5
NKX3-2P78367 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NKX3-2P78367 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NKX3-2P78367 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC24.43■■□□□ 1.5
NKX3-2P78367 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC24.43■■□□□ 1.5
NKX3-2P78367 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC24.43■■□□□ 1.5
NKX3-2P78367 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
NKX3-2P78367 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
NKX3-2P78367 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NKX3-2P78367 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC24.43■■□□□ 1.5
NKX3-2P78367 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NKX3-2P78367 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
NKX3-2P78367 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NKX3-2P78367 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
NKX3-2P78367 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC24.42■■□□□ 1.5
NKX3-2P78367 ASL-203ENST00000380839 1765 ntTSL 5 BASIC24.42■■□□□ 1.5
NKX3-2P78367 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.41■■□□□ 1.5
NKX3-2P78367 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC24.41■■□□□ 1.5
NKX3-2P78367 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
NKX3-2P78367 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC24.41■■□□□ 1.5
NKX3-2P78367 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
NKX3-2P78367 MFSD11-216ENST00000590393 1141 ntBASIC24.41■■□□□ 1.5
NKX3-2P78367 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC24.41■■□□□ 1.5
NKX3-2P78367 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
NKX3-2P78367 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NKX3-2P78367 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NKX3-2P78367 AC005224.4-201ENST00000583262 1652 ntBASIC24.4■■□□□ 1.5
NKX3-2P78367 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC24.4■■□□□ 1.5
NKX3-2P78367 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
NKX3-2P78367 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.4■■□□□ 1.5
NKX3-2P78367 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NKX3-2P78367 ABHD17AP1-201ENST00000358206 933 ntBASIC24.4■■□□□ 1.5
NKX3-2P78367 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
NKX3-2P78367 AC142086.2-201ENST00000569753 217 ntBASIC24.4■■□□□ 1.5
NKX3-2P78367 AL139125.2-201ENST00000623134 1869 ntBASIC24.4■■□□□ 1.5
NKX3-2P78367 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
NKX3-2P78367 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NKX3-2P78367 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC24.4■■□□□ 1.5
NKX3-2P78367 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
NKX3-2P78367 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.4■■□□□ 1.5
NKX3-2P78367 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC24.39■■□□□ 1.49
NKX3-2P78367 GPX1P1-201ENST00000388829 606 ntBASIC24.39■■□□□ 1.49
NKX3-2P78367 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
NKX3-2P78367 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
NKX3-2P78367 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
NKX3-2P78367 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
NKX3-2P78367 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
NKX3-2P78367 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
NKX3-2P78367 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NKX3-2P78367 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
NKX3-2P78367 AC009237.3-201ENST00000393279 1427 ntBASIC24.38■■□□□ 1.49
NKX3-2P78367 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
NKX3-2P78367 MIR663A-201ENST00000385250 93 ntBASIC24.38■■□□□ 1.49
NKX3-2P78367 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC24.38■■□□□ 1.49
NKX3-2P78367 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC24.38■■□□□ 1.49
NKX3-2P78367 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NKX3-2P78367 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
NKX3-2P78367 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC24.38■■□□□ 1.49
NKX3-2P78367 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.38■■□□□ 1.49
NKX3-2P78367 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC24.38■■□□□ 1.49
NKX3-2P78367 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC24.38■■□□□ 1.49
NKX3-2P78367 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NKX3-2P78367 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NKX3-2P78367 AL355802.2-201ENST00000402069 882 ntBASIC24.37■■□□□ 1.49
NKX3-2P78367 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC24.37■■□□□ 1.49
NKX3-2P78367 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC24.37■■□□□ 1.49
NKX3-2P78367 TFG-210ENST00000620299 1289 ntTSL 5 BASIC24.37■■□□□ 1.49
NKX3-2P78367 AC004812.2-201ENST00000611079 2094 ntBASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms