Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 ENT1YDL161W 1365 nt3.18□□□□□ -1.9
CUP9P41817 TRX3YCR083W 384 nt3.18□□□□□ -1.9
CUP9P41817 YDR193WYDR193W 399 nt3.18□□□□□ -1.9
CUP9P41817 PAU10YDR542W 363 nt3.18□□□□□ -1.9
CUP9P41817 SPO73YER046W 432 nt3.18□□□□□ -1.9
CUP9P41817 PAU11YGL261C 363 nt3.18□□□□□ -1.9
CUP9P41817 PAU13YHL046C 363 nt3.18□□□□□ -1.9
CUP9P41817 AIR1YIL079C 1083 nt3.18□□□□□ -1.9
CUP9P41817 PAU4YLR461W 363 nt3.18□□□□□ -1.9
CUP9P41817 YPT7YML001W 627 nt3.18□□□□□ -1.9
CUP9P41817 NIS1YNL078W 1224 nt3.18□□□□□ -1.9
CUP9P41817 RAD54YGL163C 2697 nt3.18□□□□□ -1.9
CUP9P41817 HST1YOL068C 1512 nt3.18□□□□□ -1.9
CUP9P41817 RAD2YGR258C 3096 nt3.18□□□□□ -1.9
CUP9P41817 RSF2YJR127C 4143 nt3.17□□□□□ -1.9
CUP9P41817 GGA1YDR358W 1674 nt3.17□□□□□ -1.9
CUP9P41817 YDL032WYDL032W 312 nt3.17□□□□□ -1.9
CUP9P41817 PRP11YDL043C 801 nt3.17□□□□□ -1.9
CUP9P41817 tC(GCA)BtC(GCA)B 72 nt3.17□□□□□ -1.9
CUP9P41817 tC(GCA)GtC(GCA)G 72 nt3.17□□□□□ -1.9
CUP9P41817 tC(GCA)P1tC(GCA)P1 72 nt3.17□□□□□ -1.9
CUP9P41817 tC(GCA)P2tC(GCA)P2 72 nt3.17□□□□□ -1.9
CUP9P41817 YGL074CYGL074C 327 nt3.17□□□□□ -1.9
CUP9P41817 ECM34YHL043W 513 nt3.17□□□□□ -1.9
CUP9P41817 MRT4YKL009W 711 nt3.17□□□□□ -1.9
CUP9P41817 MOH1YBL049W 417 nt3.17□□□□□ -1.9
CUP9P41817 FRM2YCL026C-A 582 nt3.17□□□□□ -1.9
CUP9P41817 SPT6YGR116W 4356 nt3.17□□□□□ -1.9
CUP9P41817 PTR3YFR029W 2037 nt3.17□□□□□ -1.9
CUP9P41817 RNA14YMR061W 2034 nt3.17□□□□□ -1.9
CUP9P41817 GCN5YGR252W 1320 nt3.17□□□□□ -1.9
CUP9P41817 RSC1YGR056W 2787 nt3.16□□□□□ -1.9
CUP9P41817 RNR1YER070W 2667 nt3.16□□□□□ -1.9
CUP9P41817 BMH1YER177W 804 nt3.16□□□□□ -1.9
CUP9P41817 SEC53YFL045C 765 nt3.16□□□□□ -1.9
CUP9P41817 YGL132WYGL132W 336 nt3.16□□□□□ -1.9
CUP9P41817 ECM4YKR076W 1113 nt3.16□□□□□ -1.9
CUP9P41817 RFC3YNL290W 1023 nt3.16□□□□□ -1.9
CUP9P41817 YPL073CYPL073C 486 nt3.16□□□□□ -1.9
CUP9P41817 CKS1YBR135W 453 nt3.16□□□□□ -1.9
CUP9P41817 YOR022CYOR022C 2148 nt3.16□□□□□ -1.9
CUP9P41817 RGP1YDR137W 1992 nt3.15□□□□□ -1.91
CUP9P41817 YER085CYER085C 522 nt3.15□□□□□ -1.91
CUP9P41817 SOP4YJL192C 705 nt3.15□□□□□ -1.91
CUP9P41817 YAE1YJR067C 426 nt3.15□□□□□ -1.91
CUP9P41817 RPL19BYBL027W 570 nt3.15□□□□□ -1.91
CUP9P41817 WRS1YOL097C 1299 nt3.15□□□□□ -1.91
CUP9P41817 NAT3YPR131C 588 nt3.15□□□□□ -1.91
CUP9P41817 URA2YJL130C 6645 nt3.15□□□□□ -1.91
CUP9P41817 MDN1YLR106C 14733 nt3.14□□□□□ -1.91
CUP9P41817 NUS1YDL193W 1128 nt3.14□□□□□ -1.91
CUP9P41817 PHO13YDL236W 939 nt3.14□□□□□ -1.91
CUP9P41817 YFR045WYFR045W 930 nt3.14□□□□□ -1.91
CUP9P41817 YGL041W-AYGL041W-A 465 nt3.14□□□□□ -1.91
CUP9P41817 YGL214WYGL214W 486 nt3.14□□□□□ -1.91
CUP9P41817 MCK1YNL307C 1128 nt3.14□□□□□ -1.91
CUP9P41817 YOR073W-AYOR073W-A 234 nt3.14□□□□□ -1.91
CUP9P41817 YPL014WYPL014W 1146 nt3.14□□□□□ -1.91
CUP9P41817 INA17YPL099C 549 nt3.14□□□□□ -1.91
CUP9P41817 snR37snR37 386 nt3.14□□□□□ -1.91
CUP9P41817 SLM5YCR024C 1479 nt3.14□□□□□ -1.91
CUP9P41817 APE2YKL157W 2859 nt3.14□□□□□ -1.91
CUP9P41817 DHR2YKL078W 2208 nt3.13□□□□□ -1.91
CUP9P41817 YIL152WYIL152W 708 nt3.13□□□□□ -1.91
CUP9P41817 YIR043CYIR043C 693 nt3.13□□□□□ -1.91
CUP9P41817 FYV5YCL058C 459 nt3.13□□□□□ -1.91
CUP9P41817 BUD27YFL023W 2391 nt3.13□□□□□ -1.91
CUP9P41817 PCL10YGL134W 1302 nt3.13□□□□□ -1.91
CUP9P41817 UGA3YDL170W 1587 nt3.12□□□□□ -1.91
CUP9P41817 CDC9YDL164C 2268 nt3.12□□□□□ -1.91
CUP9P41817 FMP10YER182W 735 nt3.12□□□□□ -1.91
CUP9P41817 SPO74YGL170C 1242 nt3.12□□□□□ -1.91
CUP9P41817 IDP2YLR174W 1239 nt3.12□□□□□ -1.91
CUP9P41817 VTA1YLR181C 993 nt3.12□□□□□ -1.91
CUP9P41817 YMR122W-AYMR122W-A 255 nt3.12□□□□□ -1.91
CUP9P41817 TIR2YOR010C 756 nt3.12□□□□□ -1.91
CUP9P41817 PNG1YPL096W 1092 nt3.12□□□□□ -1.91
CUP9P41817 BUD5YCR038C 1929 nt3.12□□□□□ -1.91
CUP9P41817 SRS2YJL092W 3525 nt3.12□□□□□ -1.91
CUP9P41817 HPR1YDR138W 2259 nt3.12□□□□□ -1.91
CUP9P41817 XRS2YDR369C 2565 nt3.11□□□□□ -1.91
CUP9P41817 NUP159YIL115C 4383 nt3.11□□□□□ -1.91
CUP9P41817 OPI6YDL096C 327 nt3.11□□□□□ -1.91
CUP9P41817 tK(UUU)DtK(UUU)D 73 nt3.11□□□□□ -1.91
CUP9P41817 tK(UUU)G1tK(UUU)G1 73 nt3.11□□□□□ -1.91
CUP9P41817 tK(UUU)G2tK(UUU)G2 73 nt3.11□□□□□ -1.91
CUP9P41817 tK(UUU)KtK(UUU)K 73 nt3.11□□□□□ -1.91
CUP9P41817 tK(UUU)LtK(UUU)L 73 nt3.11□□□□□ -1.91
CUP9P41817 tK(UUU)OtK(UUU)O 73 nt3.11□□□□□ -1.91
CUP9P41817 tK(UUU)PtK(UUU)P 73 nt3.11□□□□□ -1.91
CUP9P41817 VMA22YHR060W 546 nt3.11□□□□□ -1.91
CUP9P41817 PAM18YLR008C 507 nt3.11□□□□□ -1.91
CUP9P41817 YLR124WYLR124W 345 nt3.11□□□□□ -1.91
CUP9P41817 ATG8YBL078C 354 nt3.11□□□□□ -1.91
CUP9P41817 NRG2YBR066C 663 nt3.11□□□□□ -1.91
CUP9P41817 YBR103C-AYBR103C-A 144 nt3.11□□□□□ -1.91
CUP9P41817 MDL1YLR188W 2088 nt3.11□□□□□ -1.91
CUP9P41817 YNR063WYNR063W 1824 nt3.11□□□□□ -1.91
CUP9P41817 TAF6YGL112C 1551 nt3.11□□□□□ -1.91
CUP9P41817 YGL140CYGL140C 3660 nt3.11□□□□□ -1.91
Retrieved 100 of 7,029 protein–RNA pairs in 15.5 ms