Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeast

Predictions only

Length 423 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	P34223	YDR230W	YDR230W	348 nt		4.25	□□□□□ -1.73
SHP1	P34223	YDR290W	YDR290W	330 nt		4.25	□□□□□ -1.73
SHP1	P34223	DDI2	YFL061W	678 nt		4.25	□□□□□ -1.73
SHP1	P34223	LEU1	YGL009C	2340 nt		4.25	□□□□□ -1.73
SHP1	P34223	YHR112C	YHR112C	1137 nt		4.25	□□□□□ -1.73
SHP1	P34223	MNN11	YJL183W	1269 nt		4.25	□□□□□ -1.73
SHP1	P34223	ELF1	YKL160W	438 nt		4.25	□□□□□ -1.73
SHP1	P34223	YKL177W	YKL177W	339 nt		4.25	□□□□□ -1.73
SHP1	P34223	ERD2	YBL040C	660 nt		4.25	□□□□□ -1.73
SHP1	P34223	MRPS8	YMR158W	468 nt		4.25	□□□□□ -1.73
SHP1	P34223	DDI3	YNL335W	678 nt		4.25	□□□□□ -1.73
SHP1	P34223	YBR225W	YBR225W	2703 nt		4.25	□□□□□ -1.73
SHP1	P34223	POL12	YBL035C	2118 nt		4.25	□□□□□ -1.73
SHP1	P34223	PMC1	YGL006W	3522 nt		4.24	□□□□□ -1.73
SHP1	P34223	GPB1	YOR371C	2694 nt		4.24	□□□□□ -1.73
SHP1	P34223	TRP4	YDR354W	1143 nt		4.24	□□□□□ -1.73
SHP1	P34223	MRPS35	YGR165W	1038 nt		4.24	□□□□□ -1.73
SHP1	P34223	PPE1	YHR075C	1203 nt		4.24	□□□□□ -1.73
SHP1	P34223	GVP36	YIL041W	981 nt		4.24	□□□□□ -1.73
SHP1	P34223	CPR6	YLR216C	1116 nt		4.24	□□□□□ -1.73
SHP1	P34223	YOL038C-A	YOL038C-A	96 nt		4.24	□□□□□ -1.73
SHP1	P34223	IAH1	YOR126C	717 nt		4.24	□□□□□ -1.73
SHP1	P34223	RIT1	YMR283C	1542 nt		4.24	□□□□□ -1.73
SHP1	P34223	MDM34	YGL219C	1380 nt		4.24	□□□□□ -1.73
SHP1	P34223	ALG11	YNL048W	1647 nt		4.24	□□□□□ -1.73
SHP1	P34223	EGT2	YNL327W	3126 nt		4.24	□□□□□ -1.73
SHP1	P34223	SSA2	YLL024C	1920 nt		4.23	□□□□□ -1.73
SHP1	P34223	ARX1	YDR101C	1782 nt		4.23	□□□□□ -1.73
SHP1	P34223	ALG2	YGL065C	1512 nt		4.23	□□□□□ -1.73
SHP1	P34223	YDL071C	YDL071C	375 nt		4.23	□□□□□ -1.73
SHP1	P34223	YGR149W	YGR149W	1299 nt		4.23	□□□□□ -1.73
SHP1	P34223	YLR363W-A	YLR363W-A	258 nt		4.23	□□□□□ -1.73
SHP1	P34223	MTG1	YMR097C	1104 nt		4.23	□□□□□ -1.73
SHP1	P34223	TMA16	YOR252W	537 nt		4.23	□□□□□ -1.73
SHP1	P34223	TFB6	YOR352W	1032 nt		4.23	□□□□□ -1.73
SHP1	P34223	YBR056W-A	YBR056W-A	201 nt		4.23	□□□□□ -1.73
SHP1	P34223	GRX1	YCL035C	333 nt		4.23	□□□□□ -1.73
SHP1	P34223	LOS1	YKL205W	3303 nt		4.23	□□□□□ -1.73
SHP1	P34223	MEF2	YJL102W	2460 nt		4.23	□□□□□ -1.73
SHP1	P34223	SOF1	YLL011W	1470 nt		4.23	□□□□□ -1.73
SHP1	P34223	SSB1	YDL229W	1842 nt		4.23	□□□□□ -1.73
SHP1	P34223	XKS1	YGR194C	1803 nt		4.23	□□□□□ -1.73
SHP1	P34223	KIN3	YAR018C	1308 nt		4.22	□□□□□ -1.73
SHP1	P34223	VBA2	YBR293W	1425 nt		4.22	□□□□□ -1.73
SHP1	P34223	YDL094C	YDL094C	510 nt		4.22	□□□□□ -1.73
SHP1	P34223	KEG1	YFR042W	603 nt		4.22	□□□□□ -1.73
SHP1	P34223	CLC1	YGR167W	702 nt		4.22	□□□□□ -1.73
SHP1	P34223	RPN8	YOR261C	1017 nt		4.22	□□□□□ -1.73
SHP1	P34223	CBP3	YPL215W	1008 nt		4.22	□□□□□ -1.73
SHP1	P34223	AME1	YBR211C	975 nt		4.22	□□□□□ -1.73
SHP1	P34223	ENT1	YDL161W	1365 nt		4.22	□□□□□ -1.73
SHP1	P34223	PHO84	YML123C	1764 nt		4.22	□□□□□ -1.73
SHP1	P34223	CMK1	YFR014C	1341 nt		4.21	□□□□□ -1.73
SHP1	P34223	TFA1	YKL028W	1449 nt		4.21	□□□□□ -1.73
SHP1	P34223	GAS4	YOL132W	1416 nt		4.21	□□□□□ -1.73
SHP1	P34223	OLE1	YGL055W	1533 nt		4.21	□□□□□ -1.73
SHP1	P34223	GLC3	YEL011W	2115 nt		4.21	□□□□□ -1.74
SHP1	P34223	YCR016W	YCR016W	873 nt		4.21	□□□□□ -1.74
SHP1	P34223	AIM6	YDL237W	1173 nt		4.21	□□□□□ -1.74
SHP1	P34223	RRG1	YDR065W	1098 nt		4.21	□□□□□ -1.74
SHP1	P34223	CYC1	YJR048W	330 nt		4.21	□□□□□ -1.74
SHP1	P34223	RTK1	YDL025C	1863 nt		4.21	□□□□□ -1.74
SHP1	P34223	TPO2	YGR138C	1845 nt		4.21	□□□□□ -1.74
SHP1	P34223	FDC1	YDR539W	1512 nt		4.21	□□□□□ -1.74
SHP1	P34223	RRP14	YKL082C	1305 nt		4.21	□□□□□ -1.74
SHP1	P34223	GSM1	YJL103C	1857 nt		4.2	□□□□□ -1.74
SHP1	P34223	JEN1	YKL217W	1851 nt		4.2	□□□□□ -1.74
SHP1	P34223	ECM32	YER176W	3366 nt		4.2	□□□□□ -1.74
SHP1	P34223	YCR050C	YCR050C	309 nt		4.2	□□□□□ -1.74
SHP1	P34223	YCR101C	YCR101C	549 nt		4.2	□□□□□ -1.74
SHP1	P34223	ARI1	YGL157W	1044 nt		4.2	□□□□□ -1.74
SHP1	P34223	PEX21	YGR239C	867 nt		4.2	□□□□□ -1.74
SHP1	P34223	GTT2	YLL060C	702 nt		4.2	□□□□□ -1.74
SHP1	P34223	MDM12	YOL009C	816 nt		4.2	□□□□□ -1.74
SHP1	P34223	ATG19	YOL082W	1248 nt		4.2	□□□□□ -1.74
SHP1	P34223	POP4	YBR257W	840 nt		4.2	□□□□□ -1.74
SHP1	P34223	TRE1	YPL176C	2352 nt		4.2	□□□□□ -1.74
SHP1	P34223	UPC2	YDR213W	2742 nt		4.2	□□□□□ -1.74
SHP1	P34223	IOC4	YMR044W	1428 nt		4.2	□□□□□ -1.74
SHP1	P34223	PEP5	YMR231W	3090 nt		4.2	□□□□□ -1.74
SHP1	P34223	TYW1	YPL207W	2433 nt		4.2	□□□□□ -1.74
SHP1	P34223	KAR1	YNL188W	1302 nt		4.2	□□□□□ -1.74
SHP1	P34223	PMT4	YJR143C	2289 nt		4.19	□□□□□ -1.74
SHP1	P34223	YGR168C	YGR168C	1131 nt		4.19	□□□□□ -1.74
SHP1	P34223	COX19	YLL018C-A	297 nt		4.19	□□□□□ -1.74
SHP1	P34223	GCD7	YLR291C	1146 nt		4.19	□□□□□ -1.74
SHP1	P34223	YIP3	YNL044W	531 nt		4.19	□□□□□ -1.74
SHP1	P34223	CDC15	YAR019C	2925 nt		4.19	□□□□□ -1.74
SHP1	P34223	TED1	YIL039W	1422 nt		4.19	□□□□□ -1.74
SHP1	P34223	ATG26	YLR189C	3597 nt		4.19	□□□□□ -1.74
SHP1	P34223	CHL1	YPL008W	2586 nt		4.18	□□□□□ -1.74
SHP1	P34223	TDA11	YHR159W	1515 nt		4.18	□□□□□ -1.74
SHP1	P34223	NUS1	YDL193W	1128 nt		4.18	□□□□□ -1.74
SHP1	P34223	YDR271C	YDR271C	372 nt		4.18	□□□□□ -1.74
SHP1	P34223	YDR274C	YDR274C	372 nt		4.18	□□□□□ -1.74
SHP1	P34223	YHL034W-A	YHL034W-A	462 nt		4.18	□□□□□ -1.74
SHP1	P34223	ERG20	YJL167W	1059 nt		4.18	□□□□□ -1.74
SHP1	P34223	SIC1	YLR079W	855 nt		4.18	□□□□□ -1.74
SHP1	P34223	URA4	YLR420W	1095 nt		4.18	□□□□□ -1.74
SHP1	P34223	YML090W	YML090W	387 nt		4.18	□□□□□ -1.74

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