Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTPN4P29074 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.88■■□□□ 1.09
PTPN4P29074 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTPN4P29074 AC139530.1-201ENST00000575312 1977 ntBASIC21.88■■□□□ 1.09
PTPN4P29074 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTPN4P29074 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTPN4P29074 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTPN4P29074 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTPN4P29074 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.87■■□□□ 1.09
PTPN4P29074 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN4P29074 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN4P29074 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN4P29074 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
PTPN4P29074 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.87■■□□□ 1.09
PTPN4P29074 AC096631.2-201ENST00000436136 790 ntBASIC21.87■■□□□ 1.09
PTPN4P29074 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.87■■□□□ 1.09
PTPN4P29074 AC110285.6-201ENST00000617652 491 ntBASIC21.87■■□□□ 1.09
PTPN4P29074 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN4P29074 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN4P29074 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN4P29074 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTPN4P29074 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.87■■□□□ 1.09
PTPN4P29074 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN4P29074 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
PTPN4P29074 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN4P29074 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.86■■□□□ 1.09
PTPN4P29074 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.86■■□□□ 1.09
PTPN4P29074 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
PTPN4P29074 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN4P29074 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN4P29074 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTPN4P29074 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN4P29074 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.85■■□□□ 1.09
PTPN4P29074 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN4P29074 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN4P29074 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN4P29074 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.85■■□□□ 1.09
PTPN4P29074 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN4P29074 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN4P29074 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.85■■□□□ 1.09
PTPN4P29074 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.84■■□□□ 1.09
PTPN4P29074 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN4P29074 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN4P29074 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.84■■□□□ 1.09
PTPN4P29074 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN4P29074 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.84■■□□□ 1.09
PTPN4P29074 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.84■■□□□ 1.09
PTPN4P29074 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN4P29074 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
PTPN4P29074 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN4P29074 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTPN4P29074 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.83■■□□□ 1.09
PTPN4P29074 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
PTPN4P29074 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.83■■□□□ 1.09
PTPN4P29074 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTPN4P29074 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.83■■□□□ 1.09
PTPN4P29074 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
PTPN4P29074 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN4P29074 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN4P29074 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.82■■□□□ 1.08
PTPN4P29074 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
PTPN4P29074 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN4P29074 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
PTPN4P29074 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.82■■□□□ 1.08
PTPN4P29074 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.82■■□□□ 1.08
PTPN4P29074 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.82■■□□□ 1.08
PTPN4P29074 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN4P29074 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN4P29074 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN4P29074 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
PTPN4P29074 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN4P29074 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.81■■□□□ 1.08
PTPN4P29074 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.81■■□□□ 1.08
PTPN4P29074 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.81■■□□□ 1.08
PTPN4P29074 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.81■■□□□ 1.08
PTPN4P29074 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN4P29074 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN4P29074 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN4P29074 AC026310.3-201ENST00000625186 2373 ntBASIC21.81■■□□□ 1.08
PTPN4P29074 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN4P29074 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN4P29074 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
PTPN4P29074 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN4P29074 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
PTPN4P29074 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.8■■□□□ 1.08
PTPN4P29074 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN4P29074 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.8■■□□□ 1.08
PTPN4P29074 AC005837.3-201ENST00000612163 286 ntBASIC21.8■■□□□ 1.08
PTPN4P29074 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
PTPN4P29074 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
PTPN4P29074 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN4P29074 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.79■■□□□ 1.08
PTPN4P29074 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.79■■□□□ 1.08
PTPN4P29074 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN4P29074 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN4P29074 AC133561.4-201ENST00000566112 224 ntBASIC21.79■■□□□ 1.08
PTPN4P29074 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.79■■□□□ 1.08
PTPN4P29074 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN4P29074 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.79■■□□□ 1.08
PTPN4P29074 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms