Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 CROCCP5-201ENST00000436658 830 ntBASIC18.33■□□□□ 0.52
ABCA1O95477 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ABCA1O95477 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ABCA1O95477 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ABCA1O95477 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.32■□□□□ 0.52
ABCA1O95477 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.32■□□□□ 0.52
ABCA1O95477 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ABCA1O95477 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
ABCA1O95477 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ABCA1O95477 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.32■□□□□ 0.52
ABCA1O95477 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.32■□□□□ 0.52
ABCA1O95477 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.32■□□□□ 0.52
ABCA1O95477 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.32■□□□□ 0.52
ABCA1O95477 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ABCA1O95477 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ABCA1O95477 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.31■□□□□ 0.52
ABCA1O95477 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
ABCA1O95477 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ABCA1O95477 AP004607.4-201ENST00000530158 1459 ntBASIC18.31■□□□□ 0.52
ABCA1O95477 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ABCA1O95477 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ABCA1O95477 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.31■□□□□ 0.52
ABCA1O95477 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
ABCA1O95477 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA1O95477 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA1O95477 MIR663A-201ENST00000385250 93 ntBASIC18.3■□□□□ 0.52
ABCA1O95477 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
ABCA1O95477 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA1O95477 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA1O95477 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA1O95477 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA1O95477 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
ABCA1O95477 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA1O95477 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA1O95477 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA1O95477 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.3■□□□□ 0.52
ABCA1O95477 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
ABCA1O95477 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.3■□□□□ 0.52
ABCA1O95477 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA1O95477 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.29■□□□□ 0.52
ABCA1O95477 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.29■□□□□ 0.52
ABCA1O95477 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA1O95477 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA1O95477 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.29■□□□□ 0.52
ABCA1O95477 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.29■□□□□ 0.52
ABCA1O95477 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.29■□□□□ 0.52
ABCA1O95477 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.29■□□□□ 0.52
ABCA1O95477 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
ABCA1O95477 AC142086.2-201ENST00000569753 217 ntBASIC18.29■□□□□ 0.52
ABCA1O95477 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
ABCA1O95477 AC004812.2-201ENST00000611079 2094 ntBASIC18.29■□□□□ 0.52
ABCA1O95477 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA1O95477 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA1O95477 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.29■□□□□ 0.52
ABCA1O95477 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA1O95477 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA1O95477 AL355802.2-201ENST00000402069 882 ntBASIC18.29■□□□□ 0.52
ABCA1O95477 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.29■□□□□ 0.52
ABCA1O95477 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.29■□□□□ 0.52
ABCA1O95477 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.29■□□□□ 0.52
ABCA1O95477 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA1O95477 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA1O95477 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.28■□□□□ 0.52
ABCA1O95477 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ABCA1O95477 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
ABCA1O95477 LINC02228-203ENST00000641970 1355 ntBASIC18.28■□□□□ 0.52
ABCA1O95477 RARA-203ENST00000394086 2008 ntTSL 2 BASIC18.28■□□□□ 0.52
ABCA1O95477 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.28■□□□□ 0.52
ABCA1O95477 NCF1B-203ENST00000435988 1254 ntBASIC18.28■□□□□ 0.52
ABCA1O95477 BID-214ENST00000617586 542 ntTSL 5 BASIC18.28■□□□□ 0.52
ABCA1O95477 ABCB10P4-201ENST00000566803 2184 ntBASIC18.28■□□□□ 0.52
ABCA1O95477 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ABCA1O95477 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ABCA1O95477 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ABCA1O95477 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ABCA1O95477 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ABCA1O95477 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.27■□□□□ 0.52
ABCA1O95477 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.27■□□□□ 0.52
ABCA1O95477 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.27■□□□□ 0.52
ABCA1O95477 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ABCA1O95477 AC006970.2-201ENST00000450065 779 ntBASIC18.27■□□□□ 0.52
ABCA1O95477 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
ABCA1O95477 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.27■□□□□ 0.52
ABCA1O95477 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ABCA1O95477 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.27■□□□□ 0.52
ABCA1O95477 AC105233.4-201ENST00000642045 216 ntBASIC18.27■□□□□ 0.52
ABCA1O95477 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
ABCA1O95477 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.27■□□□□ 0.52
ABCA1O95477 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
ABCA1O95477 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.27■□□□□ 0.51
ABCA1O95477 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.26■□□□□ 0.51
ABCA1O95477 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.26■□□□□ 0.51
ABCA1O95477 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
ABCA1O95477 AP003733.4-201ENST00000623785 1697 ntBASIC18.26■□□□□ 0.51
ABCA1O95477 AL139125.2-201ENST00000623134 1869 ntBASIC18.26■□□□□ 0.51
ABCA1O95477 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
ABCA1O95477 GPX1P1-201ENST00000388829 606 ntBASIC18.26■□□□□ 0.51
ABCA1O95477 KRT18P11-201ENST00000435214 1283 ntBASIC18.26■□□□□ 0.51
ABCA1O95477 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ABCA1O95477 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms