Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.62■□□□□ 0.89
LDB3O75112 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDB3O75112 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDB3O75112 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
LDB3O75112 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDB3O75112 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LDB3O75112 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LDB3O75112 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LDB3O75112 AP001330.3-201ENST00000520123 633 ntBASIC20.62■□□□□ 0.89
LDB3O75112 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LDB3O75112 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.62■□□□□ 0.89
LDB3O75112 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.62■□□□□ 0.89
LDB3O75112 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDB3O75112 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB3O75112 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB3O75112 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB3O75112 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
LDB3O75112 AF213884.3-201ENST00000563833 479 ntBASIC20.61■□□□□ 0.89
LDB3O75112 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.61■□□□□ 0.89
LDB3O75112 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.61■□□□□ 0.89
LDB3O75112 AC233992.3-201ENST00000607491 485 ntBASIC20.61■□□□□ 0.89
LDB3O75112 AC005837.3-201ENST00000612163 286 ntBASIC20.61■□□□□ 0.89
LDB3O75112 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB3O75112 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.61■□□□□ 0.89
LDB3O75112 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.61■□□□□ 0.89
LDB3O75112 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB3O75112 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDB3O75112 AC087742.1-201ENST00000575880 1738 ntBASIC20.61■□□□□ 0.89
LDB3O75112 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LDB3O75112 AC012676.1-201ENST00000574705 1949 ntBASIC20.61■□□□□ 0.89
LDB3O75112 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LDB3O75112 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LDB3O75112 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.6■□□□□ 0.89
LDB3O75112 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
LDB3O75112 AC099791.1-201ENST00000416440 715 ntBASIC20.6■□□□□ 0.89
LDB3O75112 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LDB3O75112 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LDB3O75112 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LDB3O75112 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LDB3O75112 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LDB3O75112 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LDB3O75112 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB3O75112 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB3O75112 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.59■□□□□ 0.89
LDB3O75112 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB3O75112 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB3O75112 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB3O75112 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.59■□□□□ 0.89
LDB3O75112 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
LDB3O75112 SUDS3P1-201ENST00000505831 966 ntBASIC20.59■□□□□ 0.89
LDB3O75112 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.59■□□□□ 0.89
LDB3O75112 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.59■□□□□ 0.89
LDB3O75112 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LDB3O75112 AL031602.1-201ENST00000633169 911 ntBASIC20.59■□□□□ 0.89
LDB3O75112 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDB3O75112 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
LDB3O75112 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.59■□□□□ 0.89
LDB3O75112 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LDB3O75112 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.58■□□□□ 0.89
LDB3O75112 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
LDB3O75112 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
LDB3O75112 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
LDB3O75112 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LDB3O75112 MIR939-201ENST00000401314 82 ntBASIC20.58■□□□□ 0.89
LDB3O75112 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
LDB3O75112 AC027682.1-201ENST00000562846 899 ntBASIC20.58■□□□□ 0.89
LDB3O75112 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LDB3O75112 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.58■□□□□ 0.89
LDB3O75112 AC126544.1-201ENST00000580842 1059 ntBASIC20.58■□□□□ 0.89
LDB3O75112 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LDB3O75112 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LDB3O75112 AL136967.2-201ENST00000623968 743 ntBASIC20.58■□□□□ 0.89
LDB3O75112 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LDB3O75112 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LDB3O75112 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LDB3O75112 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
LDB3O75112 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LDB3O75112 AC233723.2-201ENST00000623798 2106 ntBASIC20.57■□□□□ 0.88
LDB3O75112 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
LDB3O75112 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LDB3O75112 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.57■□□□□ 0.88
LDB3O75112 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LDB3O75112 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.57■□□□□ 0.88
LDB3O75112 AC142381.2-201ENST00000566120 298 ntBASIC20.57■□□□□ 0.88
LDB3O75112 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.57■□□□□ 0.88
LDB3O75112 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LDB3O75112 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LDB3O75112 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LDB3O75112 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LDB3O75112 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
LDB3O75112 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDB3O75112 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
LDB3O75112 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LDB3O75112 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LDB3O75112 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDB3O75112 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LDB3O75112 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.56■□□□□ 0.88
LDB3O75112 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.56■□□□□ 0.88
LDB3O75112 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDB3O75112 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms