Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM13O60858 AC010542.4-201ENST00000563151 1910 ntBASIC21.55■■□□□ 1.04
TRIM13O60858 AL033527.3-201ENST00000566366 1196 ntBASIC21.55■■□□□ 1.04
TRIM13O60858 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
TRIM13O60858 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM13O60858 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM13O60858 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM13O60858 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.55■■□□□ 1.04
TRIM13O60858 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM13O60858 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM13O60858 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM13O60858 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM13O60858 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.54■■□□□ 1.04
TRIM13O60858 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM13O60858 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
TRIM13O60858 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
TRIM13O60858 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.54■■□□□ 1.04
TRIM13O60858 AC026310.3-201ENST00000625186 2373 ntBASIC21.54■■□□□ 1.04
TRIM13O60858 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.54■■□□□ 1.04
TRIM13O60858 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.54■■□□□ 1.04
TRIM13O60858 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.53■■□□□ 1.04
TRIM13O60858 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM13O60858 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM13O60858 AC021242.3-201ENST00000607598 1377 ntBASIC21.53■■□□□ 1.04
TRIM13O60858 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.53■■□□□ 1.04
TRIM13O60858 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
TRIM13O60858 AL031848.2-201ENST00000607670 837 ntBASIC21.53■■□□□ 1.04
TRIM13O60858 FAM99A-202ENST00000538190 1989 ntBASIC21.53■■□□□ 1.04
TRIM13O60858 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.53■■□□□ 1.04
TRIM13O60858 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM13O60858 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
TRIM13O60858 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM13O60858 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.52■■□□□ 1.04
TRIM13O60858 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.52■■□□□ 1.04
TRIM13O60858 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
TRIM13O60858 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.52■■□□□ 1.04
TRIM13O60858 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.52■■□□□ 1.04
TRIM13O60858 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.52■■□□□ 1.04
TRIM13O60858 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.52■■□□□ 1.04
TRIM13O60858 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM13O60858 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.52■■□□□ 1.04
TRIM13O60858 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.52■■□□□ 1.04
TRIM13O60858 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM13O60858 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
TRIM13O60858 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
TRIM13O60858 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM13O60858 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.51■■□□□ 1.03
TRIM13O60858 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM13O60858 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.51■■□□□ 1.03
TRIM13O60858 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.51■■□□□ 1.03
TRIM13O60858 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM13O60858 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
TRIM13O60858 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM13O60858 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM13O60858 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM13O60858 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.51■■□□□ 1.03
TRIM13O60858 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.51■■□□□ 1.03
TRIM13O60858 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
TRIM13O60858 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM13O60858 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM13O60858 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM13O60858 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.5■■□□□ 1.03
TRIM13O60858 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM13O60858 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM13O60858 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.5■■□□□ 1.03
TRIM13O60858 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.5■■□□□ 1.03
TRIM13O60858 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.5■■□□□ 1.03
TRIM13O60858 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM13O60858 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM13O60858 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
TRIM13O60858 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
TRIM13O60858 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM13O60858 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM13O60858 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM13O60858 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.49■■□□□ 1.03
TRIM13O60858 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.49■■□□□ 1.03
TRIM13O60858 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM13O60858 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM13O60858 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM13O60858 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM13O60858 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM13O60858 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.48■■□□□ 1.03
TRIM13O60858 CA15P2-201ENST00000611168 834 ntBASIC21.48■■□□□ 1.03
TRIM13O60858 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.48■■□□□ 1.03
TRIM13O60858 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM13O60858 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.48■■□□□ 1.03
TRIM13O60858 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM13O60858 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM13O60858 AC004687.1-201ENST00000579003 1625 ntBASIC21.47■■□□□ 1.03
TRIM13O60858 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.47■■□□□ 1.03
TRIM13O60858 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM13O60858 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.47■■□□□ 1.03
TRIM13O60858 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
TRIM13O60858 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM13O60858 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM13O60858 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.47■■□□□ 1.03
TRIM13O60858 BX664725.1-201ENST00000438252 379 ntBASIC21.47■■□□□ 1.03
TRIM13O60858 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM13O60858 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.47■■□□□ 1.03
TRIM13O60858 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms