Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SLC28A1O00337 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SLC28A1O00337 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SLC28A1O00337 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SLC28A1O00337 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.1■□□□□ 0.97
SLC28A1O00337 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SLC28A1O00337 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SLC28A1O00337 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SLC28A1O00337 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SLC28A1O00337 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SLC28A1O00337 AL451085.2-201ENST00000605085 799 ntBASIC21.09■□□□□ 0.97
SLC28A1O00337 MIR6724-1-201ENST00000616420 92 ntBASIC21.09■□□□□ 0.97
SLC28A1O00337 MIR6724-2-201ENST00000616483 92 ntBASIC21.09■□□□□ 0.97
SLC28A1O00337 MIR6724-4-201ENST00000617390 92 ntBASIC21.09■□□□□ 0.97
SLC28A1O00337 MIR6724-3-201ENST00000622482 92 ntBASIC21.09■□□□□ 0.97
SLC28A1O00337 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SLC28A1O00337 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.09■□□□□ 0.97
SLC28A1O00337 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SLC28A1O00337 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
SLC28A1O00337 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SLC28A1O00337 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SLC28A1O00337 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SLC28A1O00337 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.08■□□□□ 0.96
SLC28A1O00337 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.08■□□□□ 0.96
SLC28A1O00337 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SLC28A1O00337 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.08■□□□□ 0.96
SLC28A1O00337 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC28A1O00337 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC28A1O00337 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SLC28A1O00337 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
SLC28A1O00337 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC28A1O00337 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.07■□□□□ 0.96
SLC28A1O00337 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.07■□□□□ 0.96
SLC28A1O00337 AL499627.2-201ENST00000606283 725 ntBASIC21.07■□□□□ 0.96
SLC28A1O00337 CA15P2-201ENST00000611168 834 ntBASIC21.07■□□□□ 0.96
SLC28A1O00337 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.07■□□□□ 0.96
SLC28A1O00337 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
SLC28A1O00337 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC28A1O00337 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SLC28A1O00337 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC28A1O00337 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SLC28A1O00337 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC28A1O00337 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC28A1O00337 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC28A1O00337 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.06■□□□□ 0.96
SLC28A1O00337 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC28A1O00337 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC28A1O00337 AL117332.1-201ENST00000622628 974 ntBASIC21.06■□□□□ 0.96
SLC28A1O00337 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC28A1O00337 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC28A1O00337 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.06■□□□□ 0.96
SLC28A1O00337 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SLC28A1O00337 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC28A1O00337 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.05■□□□□ 0.96
SLC28A1O00337 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
SLC28A1O00337 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC28A1O00337 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.05■□□□□ 0.96
SLC28A1O00337 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC28A1O00337 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC28A1O00337 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.05■□□□□ 0.96
SLC28A1O00337 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
SLC28A1O00337 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.05■□□□□ 0.96
SLC28A1O00337 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
SLC28A1O00337 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SLC28A1O00337 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SLC28A1O00337 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC28A1O00337 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SLC28A1O00337 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SLC28A1O00337 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC28A1O00337 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC28A1O00337 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC28A1O00337 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.04■□□□□ 0.96
SLC28A1O00337 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.04■□□□□ 0.96
SLC28A1O00337 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC28A1O00337 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC28A1O00337 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.04■□□□□ 0.96
SLC28A1O00337 UNC93B8-201ENST00000511903 705 ntBASIC21.04■□□□□ 0.96
SLC28A1O00337 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.04■□□□□ 0.96
SLC28A1O00337 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.04■□□□□ 0.96
SLC28A1O00337 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SLC28A1O00337 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SLC28A1O00337 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
SLC28A1O00337 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SLC28A1O00337 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SLC28A1O00337 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.03■□□□□ 0.96
SLC28A1O00337 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SLC28A1O00337 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SLC28A1O00337 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SLC28A1O00337 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SLC28A1O00337 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SLC28A1O00337 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SLC28A1O00337 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.03■□□□□ 0.96
SLC28A1O00337 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.03■□□□□ 0.96
SLC28A1O00337 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.03■□□□□ 0.96
SLC28A1O00337 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.02■□□□□ 0.96
SLC28A1O00337 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SLC28A1O00337 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.02■□□□□ 0.96
SLC28A1O00337 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC28A1O00337 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
SLC28A1O00337 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms