Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 KRT18P5-201ENST00000436075 1291 ntBASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 AC012414.1-201ENST00000556676 535 ntBASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.44■■□□□ 1.02
TMX2-CTNND1H3BSU7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 RARRES2P11-201ENST00000635158 484 ntBASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
TMX2-CTNND1H3BSU7 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TMX2-CTNND1H3BSU7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.42■■□□□ 1.02
TMX2-CTNND1H3BSU7 OR2I1P-207ENST00000453522 948 ntBASIC21.42■■□□□ 1.02
TMX2-CTNND1H3BSU7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.42■■□□□ 1.02
TMX2-CTNND1H3BSU7 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.42■■□□□ 1.02
TMX2-CTNND1H3BSU7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TMX2-CTNND1H3BSU7 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TMX2-CTNND1H3BSU7 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 DUX4L4-201ENST00000566884 1269 ntBASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 AC004812.2-201ENST00000611079 2094 ntBASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TMX2-CTNND1H3BSU7 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 AP005435.1-201ENST00000529293 1178 ntBASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 DUX4L2-201ENST00000561772 1275 ntBASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 DUX4L6-201ENST00000626483 1275 ntBASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 DUX4L1-201ENST00000627662 1275 ntBASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 DUX4L8-201ENST00000629013 1275 ntBASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 DUX4L3-201ENST00000630187 1275 ntBASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 DUX4L7-201ENST00000630678 1275 ntBASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 DUX4L5-201ENST00000630834 1275 ntBASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.4■■□□□ 1.02
TMX2-CTNND1H3BSU7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.39■■□□□ 1.02
TMX2-CTNND1H3BSU7 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
TMX2-CTNND1H3BSU7 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TMX2-CTNND1H3BSU7 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TMX2-CTNND1H3BSU7 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TMX2-CTNND1H3BSU7 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.39■■□□□ 1.01
TMX2-CTNND1H3BSU7 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.39■■□□□ 1.01
TMX2-CTNND1H3BSU7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.39■■□□□ 1.01
TMX2-CTNND1H3BSU7 AC090192.1-201ENST00000517740 490 ntBASIC21.39■■□□□ 1.01
TMX2-CTNND1H3BSU7 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
TMX2-CTNND1H3BSU7 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
TMX2-CTNND1H3BSU7 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.39■■□□□ 1.01
TMX2-CTNND1H3BSU7 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TMX2-CTNND1H3BSU7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.39■■□□□ 1.01
TMX2-CTNND1H3BSU7 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TMX2-CTNND1H3BSU7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.38■■□□□ 1.01
TMX2-CTNND1H3BSU7 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
TMX2-CTNND1H3BSU7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TMX2-CTNND1H3BSU7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.38■■□□□ 1.01
TMX2-CTNND1H3BSU7 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.38■■□□□ 1.01
TMX2-CTNND1H3BSU7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TMX2-CTNND1H3BSU7 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
TMX2-CTNND1H3BSU7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
TMX2-CTNND1H3BSU7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
TMX2-CTNND1H3BSU7 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms