Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23■■□□□ 1.27
PCDHA3Q9Y5H8 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
PCDHA3Q9Y5H8 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23■■□□□ 1.27
PCDHA3Q9Y5H8 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
PCDHA3Q9Y5H8 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
PCDHA3Q9Y5H8 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23■■□□□ 1.27
PCDHA3Q9Y5H8 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23■■□□□ 1.27
PCDHA3Q9Y5H8 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 C17orf82-201ENST00000623772 1530 ntBASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 AC239859.2-201ENST00000444165 318 ntBASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 RARRES2P1-201ENST00000474487 481 ntBASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 AC010997.5-201ENST00000609182 354 ntBASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC22.99■■□□□ 1.27
PCDHA3Q9Y5H8 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 BID-212ENST00000614949 1988 ntTSL 5 BASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 AC004687.1-201ENST00000579003 1625 ntBASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PCDHA3Q9Y5H8 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDHA3Q9Y5H8 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHA3Q9Y5H8 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHA3Q9Y5H8 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHA3Q9Y5H8 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHA3Q9Y5H8 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHA3Q9Y5H8 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC22.95■■□□□ 1.26
PCDHA3Q9Y5H8 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.95■■□□□ 1.26
PCDHA3Q9Y5H8 USP48-205ENST00000421625 2818 ntTSL 2 BASIC22.95■■□□□ 1.26
PCDHA3Q9Y5H8 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 CA15P2-201ENST00000611168 834 ntBASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHA3Q9Y5H8 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC22.93■■□□□ 1.26
PCDHA3Q9Y5H8 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.93■■□□□ 1.26
PCDHA3Q9Y5H8 AC009299.2-201ENST00000482477 511 ntBASIC22.93■■□□□ 1.26
PCDHA3Q9Y5H8 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHA3Q9Y5H8 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHA3Q9Y5H8 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHA3Q9Y5H8 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHA3Q9Y5H8 FBXW4P1-201ENST00000426721 2239 ntBASIC22.93■■□□□ 1.26
PCDHA3Q9Y5H8 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC22.93■■□□□ 1.26
PCDHA3Q9Y5H8 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC22.93■■□□□ 1.26
PCDHA3Q9Y5H8 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHA3Q9Y5H8 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms