Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC42Q9Y546 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC42Q9Y546 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC42Q9Y546 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
LRRC42Q9Y546 AC021231.2-201ENST00000594613 730 ntBASIC20.74■□□□□ 0.91
LRRC42Q9Y546 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC42Q9Y546 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.74■□□□□ 0.91
LRRC42Q9Y546 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.74■□□□□ 0.91
LRRC42Q9Y546 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC42Q9Y546 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC42Q9Y546 Z98882.1-201ENST00000622160 2253 ntBASIC20.74■□□□□ 0.91
LRRC42Q9Y546 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC42Q9Y546 FEM1AP1-201ENST00000431297 1995 ntBASIC20.74■□□□□ 0.91
LRRC42Q9Y546 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.74■□□□□ 0.91
LRRC42Q9Y546 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC42Q9Y546 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC42Q9Y546 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC42Q9Y546 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC42Q9Y546 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC42Q9Y546 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC42Q9Y546 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.73■□□□□ 0.91
LRRC42Q9Y546 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC42Q9Y546 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.73■□□□□ 0.91
LRRC42Q9Y546 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC42Q9Y546 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC42Q9Y546 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC42Q9Y546 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC42Q9Y546 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
LRRC42Q9Y546 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC42Q9Y546 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.72■□□□□ 0.91
LRRC42Q9Y546 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
LRRC42Q9Y546 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
LRRC42Q9Y546 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC42Q9Y546 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC42Q9Y546 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
LRRC42Q9Y546 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC42Q9Y546 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
LRRC42Q9Y546 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.71■□□□□ 0.91
LRRC42Q9Y546 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC42Q9Y546 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC42Q9Y546 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC42Q9Y546 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.71■□□□□ 0.91
LRRC42Q9Y546 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC42Q9Y546 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC42Q9Y546 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.71■□□□□ 0.91
LRRC42Q9Y546 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.71■□□□□ 0.91
LRRC42Q9Y546 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.71■□□□□ 0.91
LRRC42Q9Y546 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC42Q9Y546 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.7■□□□□ 0.91
LRRC42Q9Y546 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
LRRC42Q9Y546 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.91
LRRC42Q9Y546 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 ALDH1A3-203ENST00000557963 1670 ntBASIC20.7■□□□□ 0.9
LRRC42Q9Y546 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRRC42Q9Y546 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRRC42Q9Y546 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRC42Q9Y546 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRC42Q9Y546 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRC42Q9Y546 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRC42Q9Y546 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRC42Q9Y546 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.68■□□□□ 0.9
LRRC42Q9Y546 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRC42Q9Y546 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRC42Q9Y546 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRC42Q9Y546 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRC42Q9Y546 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRRC42Q9Y546 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRRC42Q9Y546 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRRC42Q9Y546 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRRC42Q9Y546 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.67■□□□□ 0.9
LRRC42Q9Y546 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.67■□□□□ 0.9
LRRC42Q9Y546 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LRRC42Q9Y546 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRRC42Q9Y546 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.67■□□□□ 0.9
LRRC42Q9Y546 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRRC42Q9Y546 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
LRRC42Q9Y546 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms