Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VSX1Q9NZR4 KRT16P3-201ENST00000439127 1283 ntBASIC19.59■□□□□ 0.73
VSX1Q9NZR4 AL117332.1-201ENST00000622628 974 ntBASIC19.59■□□□□ 0.73
VSX1Q9NZR4 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VSX1Q9NZR4 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
VSX1Q9NZR4 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VSX1Q9NZR4 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VSX1Q9NZR4 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
VSX1Q9NZR4 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VSX1Q9NZR4 AC004687.1-201ENST00000579003 1625 ntBASIC19.58■□□□□ 0.73
VSX1Q9NZR4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VSX1Q9NZR4 LINC00565-201ENST00000562710 2331 ntBASIC19.58■□□□□ 0.73
VSX1Q9NZR4 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
VSX1Q9NZR4 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.58■□□□□ 0.72
VSX1Q9NZR4 AL499627.2-201ENST00000606283 725 ntBASIC19.58■□□□□ 0.72
VSX1Q9NZR4 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
VSX1Q9NZR4 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
VSX1Q9NZR4 AC092053.2-201ENST00000640557 1818 ntBASIC19.58■□□□□ 0.72
VSX1Q9NZR4 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.57■□□□□ 0.72
VSX1Q9NZR4 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VSX1Q9NZR4 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 GUSBP5-201ENST00000418136 578 ntBASIC19.55■□□□□ 0.72
VSX1Q9NZR4 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 AC241377.3-202ENST00000626088 1088 ntBASIC19.55■□□□□ 0.72
VSX1Q9NZR4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 AC241585.3-202ENST00000628937 1088 ntBASIC19.55■□□□□ 0.72
VSX1Q9NZR4 AC245100.8-202ENST00000629247 1058 ntBASIC19.55■□□□□ 0.72
VSX1Q9NZR4 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VSX1Q9NZR4 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.54■□□□□ 0.72
VSX1Q9NZR4 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
VSX1Q9NZR4 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VSX1Q9NZR4 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VSX1Q9NZR4 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.54■□□□□ 0.72
VSX1Q9NZR4 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VSX1Q9NZR4 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VSX1Q9NZR4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VSX1Q9NZR4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.54■□□□□ 0.72
VSX1Q9NZR4 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VSX1Q9NZR4 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
VSX1Q9NZR4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VSX1Q9NZR4 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms