Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
POLR2J3Q9H1A7 KRT125P-201ENST00000546827 989 ntBASIC20.28■□□□□ 0.84
POLR2J3Q9H1A7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
POLR2J3Q9H1A7 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
POLR2J3Q9H1A7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
POLR2J3Q9H1A7 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
POLR2J3Q9H1A7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
POLR2J3Q9H1A7 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
POLR2J3Q9H1A7 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
POLR2J3Q9H1A7 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
POLR2J3Q9H1A7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
POLR2J3Q9H1A7 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
POLR2J3Q9H1A7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
POLR2J3Q9H1A7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
POLR2J3Q9H1A7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
POLR2J3Q9H1A7 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 AC080038.3-201ENST00000623346 1952 ntBASIC20.25■□□□□ 0.83
POLR2J3Q9H1A7 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 AC087742.1-201ENST00000575880 1738 ntBASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
POLR2J3Q9H1A7 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
POLR2J3Q9H1A7 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
POLR2J3Q9H1A7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
POLR2J3Q9H1A7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
POLR2J3Q9H1A7 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
POLR2J3Q9H1A7 MTDHP2-201ENST00000601468 714 ntBASIC20.23■□□□□ 0.83
POLR2J3Q9H1A7 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
POLR2J3Q9H1A7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.23■□□□□ 0.83
POLR2J3Q9H1A7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.23■□□□□ 0.83
POLR2J3Q9H1A7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
POLR2J3Q9H1A7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
POLR2J3Q9H1A7 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
POLR2J3Q9H1A7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
POLR2J3Q9H1A7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
POLR2J3Q9H1A7 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
POLR2J3Q9H1A7 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.21■□□□□ 0.83
POLR2J3Q9H1A7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
POLR2J3Q9H1A7 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.21■□□□□ 0.83
POLR2J3Q9H1A7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
POLR2J3Q9H1A7 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
POLR2J3Q9H1A7 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
POLR2J3Q9H1A7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
POLR2J3Q9H1A7 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
POLR2J3Q9H1A7 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
POLR2J3Q9H1A7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
POLR2J3Q9H1A7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
POLR2J3Q9H1A7 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms