Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.08■□□□□ 0.8
SPENQ96T58 AC011767.1-201ENST00000617410 1153 ntBASIC20.08■□□□□ 0.8
SPENQ96T58 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.08■□□□□ 0.8
SPENQ96T58 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SPENQ96T58 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.07■□□□□ 0.8
SPENQ96T58 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.07■□□□□ 0.8
SPENQ96T58 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.07■□□□□ 0.8
SPENQ96T58 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
SPENQ96T58 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SPENQ96T58 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SPENQ96T58 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.07■□□□□ 0.8
SPENQ96T58 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SPENQ96T58 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.07■□□□□ 0.8
SPENQ96T58 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SPENQ96T58 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SPENQ96T58 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SPENQ96T58 AC006970.2-201ENST00000450065 779 ntBASIC20.07■□□□□ 0.8
SPENQ96T58 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SPENQ96T58 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SPENQ96T58 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SPENQ96T58 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.06■□□□□ 0.8
SPENQ96T58 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SPENQ96T58 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SPENQ96T58 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
SPENQ96T58 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SPENQ96T58 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SPENQ96T58 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SPENQ96T58 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SPENQ96T58 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SPENQ96T58 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.06■□□□□ 0.8
SPENQ96T58 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.06■□□□□ 0.8
SPENQ96T58 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SPENQ96T58 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SPENQ96T58 AC105233.4-201ENST00000642045 216 ntBASIC20.05■□□□□ 0.8
SPENQ96T58 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SPENQ96T58 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SPENQ96T58 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SPENQ96T58 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
SPENQ96T58 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SPENQ96T58 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.05■□□□□ 0.8
SPENQ96T58 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SPENQ96T58 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.05■□□□□ 0.8
SPENQ96T58 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.04■□□□□ 0.8
SPENQ96T58 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.04■□□□□ 0.8
SPENQ96T58 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.04■□□□□ 0.8
SPENQ96T58 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.04■□□□□ 0.8
SPENQ96T58 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SPENQ96T58 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.04■□□□□ 0.8
SPENQ96T58 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SPENQ96T58 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SPENQ96T58 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.04■□□□□ 0.8
SPENQ96T58 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SPENQ96T58 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SPENQ96T58 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SPENQ96T58 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.04■□□□□ 0.8
SPENQ96T58 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SPENQ96T58 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.04■□□□□ 0.8
SPENQ96T58 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SPENQ96T58 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SPENQ96T58 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SPENQ96T58 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SPENQ96T58 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.03■□□□□ 0.8
SPENQ96T58 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SPENQ96T58 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.03■□□□□ 0.8
SPENQ96T58 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SPENQ96T58 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.03■□□□□ 0.8
SPENQ96T58 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.03■□□□□ 0.8
SPENQ96T58 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.03■□□□□ 0.8
SPENQ96T58 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.03■□□□□ 0.8
SPENQ96T58 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SPENQ96T58 AC079630.1-202ENST00000618127 1840 ntBASIC20.03■□□□□ 0.8
SPENQ96T58 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.03■□□□□ 0.8
SPENQ96T58 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.03■□□□□ 0.8
SPENQ96T58 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.02■□□□□ 0.8
SPENQ96T58 MFSD11-216ENST00000590393 1141 ntBASIC20.02■□□□□ 0.8
SPENQ96T58 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.02■□□□□ 0.8
SPENQ96T58 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SPENQ96T58 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SPENQ96T58 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SPENQ96T58 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SPENQ96T58 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
SPENQ96T58 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
SPENQ96T58 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SPENQ96T58 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SPENQ96T58 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SPENQ96T58 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.01■□□□□ 0.79
SPENQ96T58 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.01■□□□□ 0.79
SPENQ96T58 BX005040.4-201ENST00000637145 1518 ntBASIC20.01■□□□□ 0.79
SPENQ96T58 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.01■□□□□ 0.79
SPENQ96T58 AC004687.1-201ENST00000579003 1625 ntBASIC20.01■□□□□ 0.79
SPENQ96T58 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SPENQ96T58 AC069152.1-201ENST00000438030 544 ntBASIC20.01■□□□□ 0.79
SPENQ96T58 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SPENQ96T58 UBE2DNL-204ENST00000602536 740 ntBASIC20.01■□□□□ 0.79
SPENQ96T58 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.01■□□□□ 0.79
SPENQ96T58 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.01■□□□□ 0.79
SPENQ96T58 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.01■□□□□ 0.79
SPENQ96T58 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SPENQ96T58 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SPENQ96T58 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 6.6 ms