Protein–RNA interactions for Protein: Q71RC2

LARP4, La-related protein 4, humanhuman

Known RBP eCLIP

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LARP4Q71RC2 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.135e-6■■■■□ 22.6
LARP4Q71RC2 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.86□□□□□ -0.195e-6■■■■□ 22.6
LARP4Q71RC2 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13.82□□□□□ -0.25e-6■■■■□ 22.6
LARP4Q71RC2 DNAJA3-212ENST00000576180 2288 ntTSL 213.33□□□□□ -0.285e-6■■■■□ 22.6
LARP4Q71RC2 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.285e-6■■■■□ 22.6
LARP4Q71RC2 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC13.26□□□□□ -0.295e-6■■■■□ 22.6
LARP4Q71RC2 USP5-201ENST00000229268 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.315e-6■■■■□ 22.6
LARP4Q71RC2 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.06□□□□□ -0.325e-6■■■■□ 22.6
LARP4Q71RC2 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.06□□□□□ -0.325e-6■■■■□ 22.6
LARP4Q71RC2 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC13.04□□□□□ -0.325e-6■■■■□ 22.6
LARP4Q71RC2 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC12.95□□□□□ -0.345e-6■■■■□ 22.6
LARP4Q71RC2 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.352e-11■■■■□ 22.6
LARP4Q71RC2 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC12.8□□□□□ -0.365e-6■■■■□ 22.6
LARP4Q71RC2 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.363e-7■■■■□ 22.6
LARP4Q71RC2 PCLAF-201ENST00000300035 2194 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.385e-6■■■■□ 22.6
LARP4Q71RC2 PSMF1-209ENST00000479715 660 ntTSL 312.25□□□□□ -0.455e-6■■■■□ 22.6
LARP4Q71RC2 USP5-202ENST00000389231 3083 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.485e-6■■■■□ 22.6
LARP4Q71RC2 CHMP2A-206ENST00000600118 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.495e-6■■■■□ 22.6
LARP4Q71RC2 CHMP2A-201ENST00000312547 913 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.495e-6■■■■□ 22.6
LARP4Q71RC2 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.55e-6■■■■□ 22.6
LARP4Q71RC2 DNAJA3-209ENST00000574393 577 ntTSL 311.79□□□□□ -0.525e-6■■■■□ 22.6
LARP4Q71RC2 RBP1-206ENST00000617459 667 ntTSL 2 BASIC11.78□□□□□ -0.525e-6■■■■□ 22.6
LARP4Q71RC2 ALKBH5-202ENST00000490106 2146 ntTSL 1 (best)11.6□□□□□ -0.552e-11■■■■□ 22.6
LARP4Q71RC2 TMEM59-201ENST00000234831 6691 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.575e-6■■■■□ 22.6
LARP4Q71RC2 PSMF1-208ENST00000478004 632 ntTSL 211.3□□□□□ -0.65e-6■■■■□ 22.6
LARP4Q71RC2 EMG1-203ENST00000611981 1223 ntTSL 211.21□□□□□ -0.615e-6■■■■□ 22.6
LARP4Q71RC2 EMG1-204ENST00000620255 720 ntTSL 211.21□□□□□ -0.615e-6■■■■□ 22.6
LARP4Q71RC2 WFS1-202ENST00000503569 3255 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.655e-6■■■■□ 22.6
LARP4Q71RC2 PSMF1-205ENST00000381899 704 ntTSL 29.41□□□□□ -0.95e-6■■■■□ 22.6
LARP4Q71RC2 PCLAF-208ENST00000560234 690 ntTSL 29.04□□□□□ -0.965e-6■■■■□ 22.6
LARP4Q71RC2 TMEM59-203ENST00000371341 1116 ntTSL 2 BASIC8.81□□□□□ -15e-6■■■■□ 22.6
LARP4Q71RC2 OAZ2-202ENST00000558194 7102 ntTSL 28.16□□□□□ -1.15e-6■■■■□ 22.6
LARP4Q71RC2 COPZ1-210ENST00000550713 548 ntTSL 27.98□□□□□ -1.135e-6■■■■□ 22.6
LARP4Q71RC2 TMEM45A-201ENST00000323523 1567 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.155e-6■■■■□ 22.6
LARP4Q71RC2 COPZ1-211ENST00000551412 548 ntTSL 27.87□□□□□ -1.155e-6■■■■□ 22.6
LARP4Q71RC2 ZCCHC17-209ENST00000627541 1158 ntTSL 5 BASIC7.64□□□□□ -1.195e-6■■■■□ 22.6
LARP4Q71RC2 AC087632.1-210ENST00000635593 668 ntTSL 57.54□□□□□ -1.25e-6■■■■□ 22.6
LARP4Q71RC2 CHMP2A-205ENST00000600006 766 ntTSL 27.28□□□□□ -1.245e-6■■■■□ 22.6
LARP4Q71RC2 AC087632.1-208ENST00000635511 920 ntTSL 57.1□□□□□ -1.275e-6■■■■□ 22.6
LARP4Q71RC2 LINC02413-202ENST00000552353 898 ntTSL 5 BASIC7.02□□□□□ -1.295e-6■■■■□ 22.6
LARP4Q71RC2 TMEM59-207ENST00000440019 618 ntTSL 27.01□□□□□ -1.295e-6■■■■□ 22.6
LARP4Q71RC2 TMEM59-206ENST00000420738 728 ntTSL 37.01□□□□□ -1.295e-6■■■■□ 22.6
LARP4Q71RC2 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC6.36□□□□□ -1.395e-6■■■■□ 22.6
LARP4Q71RC2 AC087632.1-205ENST00000635704 670 ntTSL 36.34□□□□□ -1.395e-6■■■■□ 22.6
LARP4Q71RC2 AC087632.1-214ENST00000635320 568 ntTSL 45.71□□□□□ -1.55e-6■■■■□ 22.6
LARP4Q71RC2 AC087632.1-206ENST00000635605 757 ntTSL 55.56□□□□□ -1.525e-6■■■■□ 22.6
LARP4Q71RC2 AC087632.1-203ENST00000634318 1033 ntTSL 55.27□□□□□ -1.575e-6■■■■□ 22.6
LARP4Q71RC2 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC5.19□□□□□ -1.585e-6■■■■□ 22.6
LARP4Q71RC2 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.08□□□□□ -1.65e-6■■■■□ 22.6
LARP4Q71RC2 SLC38A9-215ENST00000508124 2370 ntTSL 25.01□□□□□ -1.615e-6■■■■□ 22.6
LARP4Q71RC2 SLC38A9-210ENST00000505708 2324 ntTSL 24.81□□□□□ -1.645e-6■■■■□ 22.6
LARP4Q71RC2 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.685e-6■■■■□ 22.6
LARP4Q71RC2 SLC38A9-222ENST00000515159 3509 ntTSL 24.47□□□□□ -1.695e-6■■■■□ 22.6
LARP4Q71RC2 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.75e-6■■■■□ 22.6
LARP4Q71RC2 AC087632.1-207ENST00000634529 372 ntTSL 43.78□□□□□ -1.85e-6■■■■□ 22.6
LARP4Q71RC2 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.7□□□□□ -1.825e-6■■■■□ 22.6
LARP4Q71RC2 TMEM45A-207ENST00000489060 4615 ntTSL 1 (best)2.08□□□□□ -2.085e-6■■■■□ 22.6
LARP4Q71RC2 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.327e-8■■■■□ 22.6
LARP4Q71RC2 JPT1-201ENST00000304834 1633 ntTSL 1 (best)15.62■□□□□ 0.097e-8■■■■□ 22.6
LARP4Q71RC2 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC12.9□□□□□ -0.347e-8■■■■□ 22.6
LARP4Q71RC2 RHOC-216ENST00000484280 891 ntTSL 511.64□□□□□ -0.552e-7■■■■□ 22.6
LARP4Q71RC2 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.524e-8■■■■□ 22.6
LARP4Q71RC2 TACO1-202ENST00000581120 2304 ntTSL 216.3■□□□□ 0.24e-8■■■■□ 22.6
LARP4Q71RC2 HBG2-202ENST00000380252 694 ntTSL 3 BASIC9.64□□□□□ -0.873e-7■■■■□ 22.5
LARP4Q71RC2 HEXA-211ENST00000567411 1743 ntTSL 514.41□□□□□ -0.12e-7■■■■□ 22.5
LARP4Q71RC2 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.68□□□□□ -0.222e-7■■■■□ 22.5
LARP4Q71RC2 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.232e-7■■■■□ 22.5
LARP4Q71RC2 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.482e-7■■■■□ 22.5
LARP4Q71RC2 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.44e-9■■■■□ 22.5
LARP4Q71RC2 PRPF19-202ENST00000535326 779 ntTSL 512.68□□□□□ -0.384e-9■■■■□ 22.5
LARP4Q71RC2 PRPF19-205ENST00000540473 169 ntTSL 55.97□□□□□ -1.454e-9■■■■□ 22.5
LARP4Q71RC2 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.11e-17■■■■□ 22.5
LARP4Q71RC2 PIN1-202ENST00000380889 1670 ntTSL 1 (best)22.65■■□□□ 1.223e-10■■■■□ 22.5
LARP4Q71RC2 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.463e-10■■■■□ 22.5
LARP4Q71RC2 PIN1-204ENST00000586025 4022 ntTSL 215.06■□□□□ 03e-10■■■■□ 22.5
LARP4Q71RC2 PIN1-205ENST00000586352 755 ntTSL 314.57□□□□□ -0.083e-10■■■■□ 22.5
LARP4Q71RC2 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.323e-10■■■■□ 22.5
LARP4Q71RC2 PIN1-209ENST00000590540 702 ntTSL 311.41□□□□□ -0.583e-10■■■■□ 22.5
LARP4Q71RC2 PIN1-210ENST00000591777 533 ntTSL 311.03□□□□□ -0.643e-10■■■■□ 22.5
LARP4Q71RC2 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.925e-6■■■■□ 22.5
LARP4Q71RC2 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.94■□□□□ 0.625e-6■■■■□ 22.5
LARP4Q71RC2 SERPING1-213ENST00000619430 634 ntTSL 1 (best) BASIC12□□□□□ -0.493e-11■■■■□ 22.4
LARP4Q71RC2 SERPING1-209ENST00000530113 908 ntTSL 210.95□□□□□ -0.663e-11■■■■□ 22.4
LARP4Q71RC2 SERPING1-210ENST00000531133 1004 ntTSL 1 (best)8.19□□□□□ -1.13e-11■■■■□ 22.4
LARP4Q71RC2 STXBP5-204ENST00000367481 9177 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.049e-7■■■■□ 22.4
LARP4Q71RC2 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC7.33□□□□□ -1.249e-7■■■■□ 22.4
LARP4Q71RC2 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7.22□□□□□ -1.259e-7■■■■□ 22.4
LARP4Q71RC2 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.41■□□□□ 0.222e-14■■■■□ 22.4
LARP4Q71RC2 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.032e-14■■■■□ 22.4
LARP4Q71RC2 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.042e-14■■■■□ 22.4
LARP4Q71RC2 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.092e-14■■■■□ 22.4
LARP4Q71RC2 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.229e-18■■■■□ 22.4
LARP4Q71RC2 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.079e-18■■■■□ 22.4
LARP4Q71RC2 CST3-203ENST00000398411 3286 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.369e-18■■■■□ 22.4
LARP4Q71RC2 PLEKHJ1-210ENST00000588633 379 ntTSL 515.49■□□□□ 0.072e-10■■■■□ 22.4
LARP4Q71RC2 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.463e-9■■■■□ 22.3
LARP4Q71RC2 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.163e-9■■■■□ 22.3
LARP4Q71RC2 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.143e-9■■■■□ 22.3
LARP4Q71RC2 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.093e-9■■■■□ 22.3
LARP4Q71RC2 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.033e-9■■■■□ 22.3
Retrieved 100 of 15,922 protein–RNA pairs in 228 ms