Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RC3H1Q5TC82 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
RC3H1Q5TC82 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
RC3H1Q5TC82 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
RC3H1Q5TC82 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
RC3H1Q5TC82 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RC3H1Q5TC82 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RC3H1Q5TC82 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
RC3H1Q5TC82 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC28.12■■■□□ 2.09
RC3H1Q5TC82 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
RC3H1Q5TC82 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
RC3H1Q5TC82 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
RC3H1Q5TC82 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RC3H1Q5TC82 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC28.11■■■□□ 2.09
RC3H1Q5TC82 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC28.11■■■□□ 2.09
RC3H1Q5TC82 GPX1P1-201ENST00000388829 606 ntBASIC28.11■■■□□ 2.09
RC3H1Q5TC82 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
RC3H1Q5TC82 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC28.11■■■□□ 2.09
RC3H1Q5TC82 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC28.11■■■□□ 2.09
RC3H1Q5TC82 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RC3H1Q5TC82 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
RC3H1Q5TC82 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
RC3H1Q5TC82 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
RC3H1Q5TC82 MIR663A-201ENST00000385250 93 ntBASIC28.1■■■□□ 2.09
RC3H1Q5TC82 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC28.1■■■□□ 2.09
RC3H1Q5TC82 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC28.1■■■□□ 2.09
RC3H1Q5TC82 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC28.1■■■□□ 2.09
RC3H1Q5TC82 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC28.1■■■□□ 2.09
RC3H1Q5TC82 AC087239.1-201ENST00000622671 572 ntBASIC28.1■■■□□ 2.09
RC3H1Q5TC82 AC004687.1-201ENST00000579003 1625 ntBASIC28.1■■■□□ 2.09
RC3H1Q5TC82 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RC3H1Q5TC82 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC28.09■■■□□ 2.09
RC3H1Q5TC82 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC28.09■■■□□ 2.09
RC3H1Q5TC82 TMEM191A-211ENST00000637163 1067 ntBASIC28.09■■■□□ 2.09
RC3H1Q5TC82 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
RC3H1Q5TC82 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
RC3H1Q5TC82 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC28.08■■■□□ 2.09
RC3H1Q5TC82 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC28.08■■■□□ 2.09
RC3H1Q5TC82 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC28.08■■■□□ 2.09
RC3H1Q5TC82 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC28.08■■■□□ 2.09
RC3H1Q5TC82 AC142086.2-201ENST00000569753 217 ntBASIC28.08■■■□□ 2.09
RC3H1Q5TC82 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC28.08■■■□□ 2.09
RC3H1Q5TC82 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
RC3H1Q5TC82 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
RC3H1Q5TC82 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.08
RC3H1Q5TC82 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC28.07■■■□□ 2.08
RC3H1Q5TC82 AC079140.4-201ENST00000507448 529 ntBASIC28.07■■■□□ 2.08
RC3H1Q5TC82 WT1-AS_3.1-201ENST00000613262 234 ntBASIC28.07■■■□□ 2.08
RC3H1Q5TC82 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
RC3H1Q5TC82 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
RC3H1Q5TC82 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
RC3H1Q5TC82 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC28.07■■■□□ 2.08
RC3H1Q5TC82 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
RC3H1Q5TC82 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC28.07■■■□□ 2.08
RC3H1Q5TC82 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
RC3H1Q5TC82 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC28.06■■■□□ 2.08
RC3H1Q5TC82 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
RC3H1Q5TC82 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
RC3H1Q5TC82 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
RC3H1Q5TC82 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
RC3H1Q5TC82 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
RC3H1Q5TC82 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
RC3H1Q5TC82 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC28.05■■■□□ 2.08
RC3H1Q5TC82 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC28.05■■■□□ 2.08
RC3H1Q5TC82 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
RC3H1Q5TC82 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC28.05■■■□□ 2.08
RC3H1Q5TC82 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
RC3H1Q5TC82 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC28.05■■■□□ 2.08
RC3H1Q5TC82 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC28.05■■■□□ 2.08
RC3H1Q5TC82 GAMT-205ENST00000640762 751 ntTSL 5 BASIC28.05■■■□□ 2.08
RC3H1Q5TC82 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC28.04■■■□□ 2.08
RC3H1Q5TC82 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
RC3H1Q5TC82 OXCT2P1-201ENST00000447263 1535 ntBASIC28.04■■■□□ 2.08
RC3H1Q5TC82 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
RC3H1Q5TC82 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
RC3H1Q5TC82 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC28.04■■■□□ 2.08
RC3H1Q5TC82 MFSD11-216ENST00000590393 1141 ntBASIC28.04■■■□□ 2.08
RC3H1Q5TC82 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
RC3H1Q5TC82 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
RC3H1Q5TC82 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
RC3H1Q5TC82 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC28.03■■■□□ 2.08
RC3H1Q5TC82 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
RC3H1Q5TC82 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
RC3H1Q5TC82 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC28.03■■■□□ 2.08
RC3H1Q5TC82 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC28.02■■■□□ 2.08
RC3H1Q5TC82 AC079630.1-202ENST00000618127 1840 ntBASIC28.02■■■□□ 2.08
RC3H1Q5TC82 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms