Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 SHD-204ENST00000599689 1729 ntTSL 5 BASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 LINC00543-201ENST00000567234 1845 ntBASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 MFSD11-216ENST00000590393 1141 ntBASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC88AQ3V6T2 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC88AQ3V6T2 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC88AQ3V6T2 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC27.24■■□□□ 1.95
CCDC88AQ3V6T2 SPI1-203ENST00000533030 661 ntTSL 2 BASIC27.24■■□□□ 1.95
CCDC88AQ3V6T2 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC88AQ3V6T2 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC88AQ3V6T2 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC27.24■■□□□ 1.95
CCDC88AQ3V6T2 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC88AQ3V6T2 AC135731.1-201ENST00000569415 2548 ntBASIC27.24■■□□□ 1.95
CCDC88AQ3V6T2 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CCDC88AQ3V6T2 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CCDC88AQ3V6T2 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
CCDC88AQ3V6T2 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC27.23■■□□□ 1.95
CCDC88AQ3V6T2 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
CCDC88AQ3V6T2 KRT18P11-201ENST00000435214 1283 ntBASIC27.23■■□□□ 1.95
CCDC88AQ3V6T2 PARP1-210ENST00000629232 477 ntTSL 5 BASIC27.23■■□□□ 1.95
CCDC88AQ3V6T2 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC27.23■■□□□ 1.95
CCDC88AQ3V6T2 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CCDC88AQ3V6T2 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CCDC88AQ3V6T2 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CCDC88AQ3V6T2 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC27.22■■□□□ 1.95
CCDC88AQ3V6T2 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CCDC88AQ3V6T2 MAZ-216ENST00000616501 991 ntTSL 5 BASIC27.22■■□□□ 1.95
CCDC88AQ3V6T2 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CCDC88AQ3V6T2 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CCDC88AQ3V6T2 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC27.21■■□□□ 1.95
CCDC88AQ3V6T2 AC098934.4-201ENST00000564127 592 ntBASIC27.21■■□□□ 1.95
CCDC88AQ3V6T2 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC27.21■■□□□ 1.95
CCDC88AQ3V6T2 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CCDC88AQ3V6T2 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC27.21■■□□□ 1.95
CCDC88AQ3V6T2 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
CCDC88AQ3V6T2 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
CCDC88AQ3V6T2 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.95
CCDC88AQ3V6T2 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 METTL26-203ENST00000397664 604 ntTSL 2 BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CCDC88AQ3V6T2 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 AC011767.1-201ENST00000617410 1153 ntBASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CCDC88AQ3V6T2 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC88AQ3V6T2 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC88AQ3V6T2 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC88AQ3V6T2 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC88AQ3V6T2 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
CCDC88AQ3V6T2 AC069152.1-201ENST00000438030 544 ntBASIC27.18■■□□□ 1.94
CCDC88AQ3V6T2 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC27.18■■□□□ 1.94
CCDC88AQ3V6T2 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC27.18■■□□□ 1.94
CCDC88AQ3V6T2 FP325331.1-202ENST00000623531 1380 ntBASIC27.18■■□□□ 1.94
CCDC88AQ3V6T2 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 KLF13-207ENST00000560473 489 ntTSL 3 BASIC27.17■■□□□ 1.94
CCDC88AQ3V6T2 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC27.16■■□□□ 1.94
CCDC88AQ3V6T2 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms