Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM4P50479 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.63■□□□□ 0.57
PDLIM4P50479 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.63■□□□□ 0.57
PDLIM4P50479 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.63■□□□□ 0.57
PDLIM4P50479 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.63■□□□□ 0.57
PDLIM4P50479 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.63■□□□□ 0.57
PDLIM4P50479 AL031602.1-201ENST00000633169 911 ntBASIC18.63■□□□□ 0.57
PDLIM4P50479 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.63■□□□□ 0.57
PDLIM4P50479 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM4P50479 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM4P50479 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM4P50479 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM4P50479 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
PDLIM4P50479 KRT18P5-201ENST00000436075 1291 ntBASIC18.62■□□□□ 0.57
PDLIM4P50479 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM4P50479 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.62■□□□□ 0.57
PDLIM4P50479 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC18.62■□□□□ 0.57
PDLIM4P50479 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM4P50479 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.62■□□□□ 0.57
PDLIM4P50479 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.62■□□□□ 0.57
PDLIM4P50479 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM4P50479 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM4P50479 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM4P50479 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM4P50479 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.62■□□□□ 0.57
PDLIM4P50479 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM4P50479 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PDLIM4P50479 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.61■□□□□ 0.57
PDLIM4P50479 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 DUX4L2-201ENST00000561772 1275 ntBASIC18.61■□□□□ 0.57
PDLIM4P50479 AL137784.2-201ENST00000607332 1000 ntBASIC18.61■□□□□ 0.57
PDLIM4P50479 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.61■□□□□ 0.57
PDLIM4P50479 DUX4L6-201ENST00000626483 1275 ntBASIC18.61■□□□□ 0.57
PDLIM4P50479 DUX4L1-201ENST00000627662 1275 ntBASIC18.61■□□□□ 0.57
PDLIM4P50479 DUX4L8-201ENST00000629013 1275 ntBASIC18.61■□□□□ 0.57
PDLIM4P50479 DUX4L3-201ENST00000630187 1275 ntBASIC18.61■□□□□ 0.57
PDLIM4P50479 DUX4L7-201ENST00000630678 1275 ntBASIC18.61■□□□□ 0.57
PDLIM4P50479 DUX4L5-201ENST00000630834 1275 ntBASIC18.61■□□□□ 0.57
PDLIM4P50479 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM4P50479 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.6■□□□□ 0.57
PDLIM4P50479 AL139125.2-201ENST00000623134 1869 ntBASIC18.6■□□□□ 0.57
PDLIM4P50479 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM4P50479 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PDLIM4P50479 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM4P50479 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.6■□□□□ 0.57
PDLIM4P50479 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM4P50479 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM4P50479 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PDLIM4P50479 AC022517.1-201ENST00000592429 346 ntBASIC18.6■□□□□ 0.57
PDLIM4P50479 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM4P50479 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM4P50479 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM4P50479 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM4P50479 LINC02228-203ENST00000641970 1355 ntBASIC18.59■□□□□ 0.57
PDLIM4P50479 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM4P50479 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM4P50479 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM4P50479 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM4P50479 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM4P50479 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.59■□□□□ 0.57
PDLIM4P50479 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.59■□□□□ 0.57
PDLIM4P50479 AC105233.4-201ENST00000642045 216 ntBASIC18.59■□□□□ 0.57
PDLIM4P50479 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM4P50479 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
PDLIM4P50479 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM4P50479 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.59■□□□□ 0.57
PDLIM4P50479 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.58■□□□□ 0.57
PDLIM4P50479 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM4P50479 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM4P50479 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
PDLIM4P50479 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM4P50479 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM4P50479 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM4P50479 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM4P50479 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
PDLIM4P50479 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM4P50479 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
PDLIM4P50479 CCDC92B-201ENST00000575506 885 ntBASIC18.58■□□□□ 0.56
PDLIM4P50479 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM4P50479 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM4P50479 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM4P50479 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM4P50479 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM4P50479 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM4P50479 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
PDLIM4P50479 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.57■□□□□ 0.56
PDLIM4P50479 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM4P50479 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM4P50479 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.57■□□□□ 0.56
PDLIM4P50479 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms