Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.16■■□□□ 1.14
CXCL12P48061 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
CXCL12P48061 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CXCL12P48061 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
CXCL12P48061 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CXCL12P48061 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CXCL12P48061 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CXCL12P48061 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CXCL12P48061 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC22.15■■□□□ 1.14
CXCL12P48061 AC142086.2-201ENST00000569753 217 ntBASIC22.15■■□□□ 1.14
CXCL12P48061 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
CXCL12P48061 EI24-211ENST00000534546 1544 ntTSL 2 BASIC22.15■■□□□ 1.14
CXCL12P48061 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.15■■□□□ 1.14
CXCL12P48061 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC22.15■■□□□ 1.14
CXCL12P48061 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CXCL12P48061 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CXCL12P48061 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CXCL12P48061 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CXCL12P48061 TSPY20P-201ENST00000450910 630 ntBASIC22.14■■□□□ 1.13
CXCL12P48061 AC010141.3-201ENST00000456659 717 ntBASIC22.14■■□□□ 1.13
CXCL12P48061 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.13
CXCL12P48061 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC22.14■■□□□ 1.13
CXCL12P48061 AL121832.2-201ENST00000610979 668 ntBASIC22.14■■□□□ 1.13
CXCL12P48061 AC066615.1-201ENST00000640911 628 ntBASIC22.14■■□□□ 1.13
CXCL12P48061 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CXCL12P48061 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CXCL12P48061 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CXCL12P48061 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CXCL12P48061 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CXCL12P48061 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC22.13■■□□□ 1.13
CXCL12P48061 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CXCL12P48061 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CXCL12P48061 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CXCL12P48061 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC22.13■■□□□ 1.13
CXCL12P48061 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CXCL12P48061 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CXCL12P48061 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CXCL12P48061 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CXCL12P48061 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CXCL12P48061 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CXCL12P48061 AC083906.2-201ENST00000511578 360 ntBASIC22.12■■□□□ 1.13
CXCL12P48061 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC22.12■■□□□ 1.13
CXCL12P48061 GAMT-205ENST00000640762 751 ntTSL 5 BASIC22.12■■□□□ 1.13
CXCL12P48061 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CXCL12P48061 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CXCL12P48061 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC22.12■■□□□ 1.13
CXCL12P48061 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CXCL12P48061 AC022211.4-201ENST00000625094 2161 ntBASIC22.12■■□□□ 1.13
CXCL12P48061 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
CXCL12P48061 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CXCL12P48061 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CXCL12P48061 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CXCL12P48061 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CXCL12P48061 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
CXCL12P48061 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CXCL12P48061 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
CXCL12P48061 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CXCL12P48061 AC004687.1-201ENST00000579003 1625 ntBASIC22.11■■□□□ 1.13
CXCL12P48061 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
CXCL12P48061 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CXCL12P48061 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC22.11■■□□□ 1.13
CXCL12P48061 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC22.11■■□□□ 1.13
CXCL12P48061 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CXCL12P48061 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC22.1■■□□□ 1.13
CXCL12P48061 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.1■■□□□ 1.13
CXCL12P48061 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.1■■□□□ 1.13
CXCL12P48061 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CXCL12P48061 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC22.1■■□□□ 1.13
CXCL12P48061 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CXCL12P48061 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CXCL12P48061 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CXCL12P48061 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
CXCL12P48061 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC22.1■■□□□ 1.13
CXCL12P48061 MFSD11-216ENST00000590393 1141 ntBASIC22.1■■□□□ 1.13
CXCL12P48061 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CXCL12P48061 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CXCL12P48061 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
CXCL12P48061 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.09■■□□□ 1.13
CXCL12P48061 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CXCL12P48061 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CXCL12P48061 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC22.09■■□□□ 1.13
CXCL12P48061 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CXCL12P48061 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CXCL12P48061 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC22.09■■□□□ 1.13
CXCL12P48061 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CXCL12P48061 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
CXCL12P48061 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CXCL12P48061 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CXCL12P48061 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CXCL12P48061 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
CXCL12P48061 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
CXCL12P48061 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CXCL12P48061 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CXCL12P48061 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CXCL12P48061 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CXCL12P48061 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC22.08■■□□□ 1.13
CXCL12P48061 TSPY6P-201ENST00000448518 926 ntBASIC22.08■■□□□ 1.13
CXCL12P48061 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC22.08■■□□□ 1.13
CXCL12P48061 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.08■■□□□ 1.13
CXCL12P48061 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms