Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HLA-DMBP28068 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DMBP28068 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC16.71■□□□□ 0.27
HLA-DMBP28068 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HLA-DMBP28068 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DMBP28068 TSPY9P-201ENST00000440215 945 ntBASIC16.71■□□□□ 0.27
HLA-DMBP28068 TSPY11P-201ENST00000442607 1045 ntBASIC16.71■□□□□ 0.27
HLA-DMBP28068 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC16.71■□□□□ 0.27
HLA-DMBP28068 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DMBP28068 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DMBP28068 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DMBP28068 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HLA-DMBP28068 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DMBP28068 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DMBP28068 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DMBP28068 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DMBP28068 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC16.7■□□□□ 0.26
HLA-DMBP28068 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DMBP28068 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC16.7■□□□□ 0.26
HLA-DMBP28068 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DMBP28068 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC16.7■□□□□ 0.26
HLA-DMBP28068 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC16.7■□□□□ 0.26
HLA-DMBP28068 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DMBP28068 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC16.7■□□□□ 0.26
HLA-DMBP28068 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DMBP28068 LINC01529-204ENST00000636474 1715 ntBASIC16.7■□□□□ 0.26
HLA-DMBP28068 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HLA-DMBP28068 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DMBP28068 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DMBP28068 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC16.69■□□□□ 0.26
HLA-DMBP28068 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
HLA-DMBP28068 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC16.69■□□□□ 0.26
HLA-DMBP28068 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DMBP28068 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC16.69■□□□□ 0.26
HLA-DMBP28068 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DMBP28068 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DMBP28068 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DMBP28068 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DMBP28068 AC007375.3-201ENST00000600936 2314 ntBASIC16.68■□□□□ 0.26
HLA-DMBP28068 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DMBP28068 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC16.68■□□□□ 0.26
HLA-DMBP28068 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DMBP28068 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC16.68■□□□□ 0.26
HLA-DMBP28068 KRT16P3-201ENST00000439127 1283 ntBASIC16.68■□□□□ 0.26
HLA-DMBP28068 UNC93B8-201ENST00000511903 705 ntBASIC16.68■□□□□ 0.26
HLA-DMBP28068 AC092028.1-203ENST00000608262 953 ntBASIC16.68■□□□□ 0.26
HLA-DMBP28068 NKILA-201ENST00000613231 537 ntTSL 4 BASIC16.68■□□□□ 0.26
HLA-DMBP28068 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DMBP28068 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DMBP28068 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DMBP28068 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DMBP28068 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
HLA-DMBP28068 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DMBP28068 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DMBP28068 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HLA-DMBP28068 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DMBP28068 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DMBP28068 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DMBP28068 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DMBP28068 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DMBP28068 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC16.67■□□□□ 0.26
HLA-DMBP28068 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DMBP28068 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC16.67■□□□□ 0.26
HLA-DMBP28068 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC16.67■□□□□ 0.26
HLA-DMBP28068 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
HLA-DMBP28068 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DMBP28068 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC16.67■□□□□ 0.26
HLA-DMBP28068 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DMBP28068 AC092053.2-201ENST00000640557 1818 ntBASIC16.67■□□□□ 0.26
HLA-DMBP28068 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC16.67■□□□□ 0.26
HLA-DMBP28068 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DMBP28068 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
HLA-DMBP28068 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HLA-DMBP28068 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HLA-DMBP28068 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DMBP28068 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms