Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
COL5A3P25940 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL5A3P25940 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC28.21■■■□□ 2.11
COL5A3P25940 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL5A3P25940 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC28.21■■■□□ 2.11
COL5A3P25940 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL5A3P25940 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL5A3P25940 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC28.21■■■□□ 2.11
COL5A3P25940 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
COL5A3P25940 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC28.21■■■□□ 2.11
COL5A3P25940 CPT2-209ENST00000636935 803 ntTSL 5 BASIC28.21■■■□□ 2.11
COL5A3P25940 GAMT-205ENST00000640762 751 ntTSL 5 BASIC28.21■■■□□ 2.11
COL5A3P25940 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.11
COL5A3P25940 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
COL5A3P25940 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC28.2■■■□□ 2.11
COL5A3P25940 EI24-211ENST00000534546 1544 ntTSL 2 BASIC28.2■■■□□ 2.11
COL5A3P25940 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
COL5A3P25940 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC28.2■■■□□ 2.1
COL5A3P25940 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC28.2■■■□□ 2.1
COL5A3P25940 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC28.2■■■□□ 2.1
COL5A3P25940 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
COL5A3P25940 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
COL5A3P25940 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
COL5A3P25940 MED17-227ENST00000640521 2047 ntTSL 5 BASIC28.19■■■□□ 2.1
COL5A3P25940 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
COL5A3P25940 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC28.19■■■□□ 2.1
COL5A3P25940 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC28.19■■■□□ 2.1
COL5A3P25940 AC087239.1-201ENST00000622671 572 ntBASIC28.19■■■□□ 2.1
COL5A3P25940 EED-207ENST00000528180 1745 ntTSL 5 BASIC28.19■■■□□ 2.1
COL5A3P25940 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
COL5A3P25940 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL5A3P25940 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL5A3P25940 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC28.18■■■□□ 2.1
COL5A3P25940 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL5A3P25940 GUSBP6-202ENST00000438529 1198 ntBASIC28.18■■■□□ 2.1
COL5A3P25940 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC28.18■■■□□ 2.1
COL5A3P25940 WT1-AS_3.1-201ENST00000613262 234 ntBASIC28.18■■■□□ 2.1
COL5A3P25940 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL5A3P25940 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL5A3P25940 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
COL5A3P25940 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
COL5A3P25940 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
COL5A3P25940 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL5A3P25940 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC28.17■■■□□ 2.1
COL5A3P25940 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
COL5A3P25940 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC28.16■■■□□ 2.1
COL5A3P25940 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL5A3P25940 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL5A3P25940 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC28.16■■■□□ 2.1
COL5A3P25940 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL5A3P25940 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL5A3P25940 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC28.15■■■□□ 2.1
COL5A3P25940 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL5A3P25940 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC28.15■■■□□ 2.1
COL5A3P25940 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL5A3P25940 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL5A3P25940 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL5A3P25940 AC142381.3-201ENST00000568208 1670 ntBASIC28.15■■■□□ 2.1
COL5A3P25940 KRT18P11-201ENST00000435214 1283 ntBASIC28.15■■■□□ 2.1
COL5A3P25940 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC28.15■■■□□ 2.1
COL5A3P25940 SLC7A5P2-201ENST00000553010 536 ntBASIC28.15■■■□□ 2.1
COL5A3P25940 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL5A3P25940 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC28.14■■■□□ 2.1
COL5A3P25940 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC28.14■■■□□ 2.1
COL5A3P25940 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
COL5A3P25940 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
COL5A3P25940 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
COL5A3P25940 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC28.14■■■□□ 2.09
COL5A3P25940 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
COL5A3P25940 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
COL5A3P25940 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC28.13■■■□□ 2.09
COL5A3P25940 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC28.13■■■□□ 2.09
COL5A3P25940 SPI1-203ENST00000533030 661 ntTSL 2 BASIC28.13■■■□□ 2.09
COL5A3P25940 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
COL5A3P25940 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC28.13■■■□□ 2.09
COL5A3P25940 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL5A3P25940 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL5A3P25940 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
COL5A3P25940 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
COL5A3P25940 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
COL5A3P25940 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
COL5A3P25940 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
COL5A3P25940 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
COL5A3P25940 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC28.12■■■□□ 2.09
COL5A3P25940 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
COL5A3P25940 AC010141.3-201ENST00000456659 717 ntBASIC28.12■■■□□ 2.09
COL5A3P25940 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC28.12■■■□□ 2.09
COL5A3P25940 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC28.12■■■□□ 2.09
COL5A3P25940 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC28.12■■■□□ 2.09
COL5A3P25940 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
COL5A3P25940 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC28.11■■■□□ 2.09
COL5A3P25940 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC28.11■■■□□ 2.09
COL5A3P25940 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL5A3P25940 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC28.11■■■□□ 2.09
COL5A3P25940 KRT87P-202ENST00000534226 1464 ntBASIC28.11■■■□□ 2.09
COL5A3P25940 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
COL5A3P25940 METTL26-203ENST00000397664 604 ntTSL 2 BASIC28.1■■■□□ 2.09
COL5A3P25940 AC011767.1-201ENST00000617410 1153 ntBASIC28.1■■■□□ 2.09
COL5A3P25940 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL5A3P25940 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms