Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A1P20908 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A1P20908 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A1P20908 MIR663A-201ENST00000385250 93 ntBASIC21.39■■□□□ 1.01
COL5A1P20908 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A1P20908 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A1P20908 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A1P20908 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A1P20908 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A1P20908 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.38■■□□□ 1.01
COL5A1P20908 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
COL5A1P20908 CROCCP5-201ENST00000436658 830 ntBASIC21.38■■□□□ 1.01
COL5A1P20908 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A1P20908 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A1P20908 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.38■■□□□ 1.01
COL5A1P20908 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A1P20908 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A1P20908 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A1P20908 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A1P20908 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
COL5A1P20908 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.37■■□□□ 1.01
COL5A1P20908 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.37■■□□□ 1.01
COL5A1P20908 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.37■■□□□ 1.01
COL5A1P20908 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A1P20908 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.37■■□□□ 1.01
COL5A1P20908 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.37■■□□□ 1.01
COL5A1P20908 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A1P20908 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A1P20908 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A1P20908 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.36■■□□□ 1.01
COL5A1P20908 AC087239.1-201ENST00000622671 572 ntBASIC21.36■■□□□ 1.01
COL5A1P20908 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.36■■□□□ 1.01
COL5A1P20908 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A1P20908 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A1P20908 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A1P20908 KRT18P11-201ENST00000435214 1283 ntBASIC21.36■■□□□ 1.01
COL5A1P20908 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A1P20908 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A1P20908 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.36■■□□□ 1.01
COL5A1P20908 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.36■■□□□ 1.01
COL5A1P20908 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.36■■□□□ 1.01
COL5A1P20908 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A1P20908 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A1P20908 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A1P20908 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A1P20908 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A1P20908 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A1P20908 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A1P20908 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A1P20908 NCF1B-203ENST00000435988 1254 ntBASIC21.34■■□□□ 1.01
COL5A1P20908 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A1P20908 AC006970.2-201ENST00000450065 779 ntBASIC21.34■■□□□ 1.01
COL5A1P20908 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
COL5A1P20908 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.34■■□□□ 1.01
COL5A1P20908 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.34■■□□□ 1.01
COL5A1P20908 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A1P20908 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A1P20908 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.34■■□□□ 1.01
COL5A1P20908 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.34■■□□□ 1.01
COL5A1P20908 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A1P20908 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A1P20908 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A1P20908 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.34■■□□□ 1.01
COL5A1P20908 LINC01124-201ENST00000409786 2117 ntBASIC21.34■■□□□ 1.01
COL5A1P20908 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.34■■□□□ 1.01
COL5A1P20908 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A1P20908 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A1P20908 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A1P20908 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
COL5A1P20908 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A1P20908 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A1P20908 AL355802.2-201ENST00000402069 882 ntBASIC21.33■■□□□ 1.01
COL5A1P20908 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.33■■□□□ 1.01
COL5A1P20908 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.33■■□□□ 1.01
COL5A1P20908 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.33■■□□□ 1.01
COL5A1P20908 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL5A1P20908 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.33■■□□□ 1
COL5A1P20908 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL5A1P20908 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL5A1P20908 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL5A1P20908 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.32■■□□□ 1
COL5A1P20908 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.32■■□□□ 1
COL5A1P20908 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.32■■□□□ 1
COL5A1P20908 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL5A1P20908 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL5A1P20908 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
COL5A1P20908 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
COL5A1P20908 AL109923.1-201ENST00000618799 583 ntBASIC21.32■■□□□ 1
COL5A1P20908 ESRRAP2-201ENST00000418437 1549 ntBASIC21.31■■□□□ 1
COL5A1P20908 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A1P20908 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.31■■□□□ 1
COL5A1P20908 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A1P20908 SMUG1P1-201ENST00000590640 811 ntBASIC21.31■■□□□ 1
COL5A1P20908 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.31■■□□□ 1
COL5A1P20908 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A1P20908 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A1P20908 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A1P20908 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL5A1P20908 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COL5A1P20908 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms