Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
PRKNO60260 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
PRKNO60260 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PRKNO60260 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
PRKNO60260 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PRKNO60260 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.47■□□□□ 0.87
PRKNO60260 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PRKNO60260 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.47■□□□□ 0.87
PRKNO60260 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
PRKNO60260 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
PRKNO60260 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRKNO60260 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRKNO60260 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.46■□□□□ 0.87
PRKNO60260 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
PRKNO60260 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRKNO60260 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.46■□□□□ 0.87
PRKNO60260 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PRKNO60260 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PRKNO60260 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRKNO60260 C1orf229-201ENST00000623686 2258 ntBASIC20.46■□□□□ 0.87
PRKNO60260 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRKNO60260 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRKNO60260 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.87
PRKNO60260 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.87
PRKNO60260 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
PRKNO60260 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.45■□□□□ 0.86
PRKNO60260 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.45■□□□□ 0.86
PRKNO60260 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.45■□□□□ 0.86
PRKNO60260 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PRKNO60260 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.45■□□□□ 0.86
PRKNO60260 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.45■□□□□ 0.86
PRKNO60260 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PRKNO60260 AC126544.1-201ENST00000580842 1059 ntBASIC20.45■□□□□ 0.86
PRKNO60260 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
PRKNO60260 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.45■□□□□ 0.86
PRKNO60260 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.44■□□□□ 0.86
PRKNO60260 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PRKNO60260 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PRKNO60260 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.44■□□□□ 0.86
PRKNO60260 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
PRKNO60260 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PRKNO60260 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PRKNO60260 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PRKNO60260 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PRKNO60260 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.44■□□□□ 0.86
PRKNO60260 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PRKNO60260 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PRKNO60260 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.43■□□□□ 0.86
PRKNO60260 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PRKNO60260 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PRKNO60260 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
PRKNO60260 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
PRKNO60260 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PRKNO60260 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.43■□□□□ 0.86
PRKNO60260 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PRKNO60260 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.43■□□□□ 0.86
PRKNO60260 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.43■□□□□ 0.86
PRKNO60260 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PRKNO60260 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PRKNO60260 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
PRKNO60260 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PRKNO60260 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.42■□□□□ 0.86
PRKNO60260 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.42■□□□□ 0.86
PRKNO60260 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
PRKNO60260 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PRKNO60260 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.42■□□□□ 0.86
PRKNO60260 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PRKNO60260 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.42■□□□□ 0.86
PRKNO60260 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PRKNO60260 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PRKNO60260 AC133561.1-201ENST00000568600 2415 ntBASIC20.42■□□□□ 0.86
PRKNO60260 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
PRKNO60260 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.41■□□□□ 0.86
PRKNO60260 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.41■□□□□ 0.86
PRKNO60260 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 MIR935-201ENST00000401179 91 ntBASIC20.41■□□□□ 0.86
PRKNO60260 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
PRKNO60260 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.41■□□□□ 0.86
PRKNO60260 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
PRKNO60260 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PRKNO60260 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PRKNO60260 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PRKNO60260 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
PRKNO60260 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
PRKNO60260 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.4■□□□□ 0.86
PRKNO60260 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.4■□□□□ 0.86
PRKNO60260 TSPY26P-201ENST00000476365 1326 ntBASIC20.4■□□□□ 0.86
PRKNO60260 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.4■□□□□ 0.86
PRKNO60260 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.4■□□□□ 0.86
PRKNO60260 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms