Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SDCBPO00560 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.64■□□□□ 0.57
SDCBPO00560 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDCBPO00560 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDCBPO00560 FBXW4P1-201ENST00000426721 2239 ntBASIC18.64■□□□□ 0.57
SDCBPO00560 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.64■□□□□ 0.57
SDCBPO00560 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDCBPO00560 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SDCBPO00560 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.64■□□□□ 0.57
SDCBPO00560 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.64■□□□□ 0.57
SDCBPO00560 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SDCBPO00560 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDCBPO00560 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SDCBPO00560 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.64■□□□□ 0.57
SDCBPO00560 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.64■□□□□ 0.57
SDCBPO00560 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDCBPO00560 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDCBPO00560 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDCBPO00560 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
SDCBPO00560 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDCBPO00560 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDCBPO00560 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDCBPO00560 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDCBPO00560 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SDCBPO00560 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.63■□□□□ 0.57
SDCBPO00560 AC021242.3-201ENST00000607598 1377 ntBASIC18.63■□□□□ 0.57
SDCBPO00560 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.63■□□□□ 0.57
SDCBPO00560 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.63■□□□□ 0.57
SDCBPO00560 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDCBPO00560 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDCBPO00560 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDCBPO00560 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDCBPO00560 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SDCBPO00560 AL024507.2-201ENST00000606070 2574 ntBASIC18.62■□□□□ 0.57
SDCBPO00560 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDCBPO00560 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDCBPO00560 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SDCBPO00560 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.62■□□□□ 0.57
SDCBPO00560 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.62■□□□□ 0.57
SDCBPO00560 KRT125P-201ENST00000546827 989 ntBASIC18.62■□□□□ 0.57
SDCBPO00560 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
SDCBPO00560 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.62■□□□□ 0.57
SDCBPO00560 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDCBPO00560 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.62■□□□□ 0.57
SDCBPO00560 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDCBPO00560 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SDCBPO00560 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SDCBPO00560 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDCBPO00560 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.62■□□□□ 0.57
SDCBPO00560 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.61■□□□□ 0.57
SDCBPO00560 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDCBPO00560 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDCBPO00560 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDCBPO00560 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDCBPO00560 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SDCBPO00560 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SDCBPO00560 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDCBPO00560 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC18.61■□□□□ 0.57
SDCBPO00560 CLTA-210ENST00000540080 989 ntTSL 2 BASIC18.61■□□□□ 0.57
SDCBPO00560 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDCBPO00560 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDCBPO00560 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDCBPO00560 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SDCBPO00560 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDCBPO00560 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.6■□□□□ 0.57
SDCBPO00560 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDCBPO00560 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SDCBPO00560 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
SDCBPO00560 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SDCBPO00560 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDCBPO00560 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDCBPO00560 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SDCBPO00560 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SDCBPO00560 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDCBPO00560 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDCBPO00560 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDCBPO00560 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDCBPO00560 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDCBPO00560 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDCBPO00560 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SDCBPO00560 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.59■□□□□ 0.57
SDCBPO00560 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.59■□□□□ 0.57
SDCBPO00560 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDCBPO00560 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SDCBPO00560 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.59■□□□□ 0.57
SDCBPO00560 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDCBPO00560 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SDCBPO00560 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SDCBPO00560 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC18.59■□□□□ 0.57
SDCBPO00560 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.59■□□□□ 0.57
SDCBPO00560 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SDCBPO00560 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
SDCBPO00560 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.58■□□□□ 0.57
SDCBPO00560 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SDCBPO00560 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SDCBPO00560 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SDCBPO00560 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDCBPO00560 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.58■□□□□ 0.56
SDCBPO00560 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDCBPO00560 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms