Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.06■□□□□ 0.8
COL6A6A6NMZ7 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A6A6NMZ7 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A6A6NMZ7 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A6A6NMZ7 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
COL6A6A6NMZ7 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A6A6NMZ7 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A6A6NMZ7 FP325331.1-202ENST00000623531 1380 ntBASIC20.05■□□□□ 0.8
COL6A6A6NMZ7 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A6A6NMZ7 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A6A6NMZ7 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL6A6A6NMZ7 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.04■□□□□ 0.8
COL6A6A6NMZ7 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 UBE2DNL-204ENST00000602536 740 ntBASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A6A6NMZ7 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A6A6NMZ7 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A6A6NMZ7 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A6A6NMZ7 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.02■□□□□ 0.8
COL6A6A6NMZ7 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A6A6NMZ7 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.02■□□□□ 0.8
COL6A6A6NMZ7 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A6A6NMZ7 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A6A6NMZ7 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.02■□□□□ 0.8
COL6A6A6NMZ7 MYCNOS-205ENST00000641950 531 ntBASIC20.02■□□□□ 0.8
COL6A6A6NMZ7 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 MIR6089-201ENST00000616698 64 ntBASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 MIR1224-201ENST00000408193 85 ntBASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A6A6NMZ7 AL161729.1-201ENST00000604104 1402 ntBASIC20■□□□□ 0.79
COL6A6A6NMZ7 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20■□□□□ 0.79
COL6A6A6NMZ7 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A6A6NMZ7 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A6A6NMZ7 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
COL6A6A6NMZ7 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A6A6NMZ7 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A6A6NMZ7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A6A6NMZ7 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A6A6NMZ7 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
COL6A6A6NMZ7 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A6A6NMZ7 AC105036.2-201ENST00000569468 176 ntBASIC20■□□□□ 0.79
COL6A6A6NMZ7 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
COL6A6A6NMZ7 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A6A6NMZ7 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL6A6A6NMZ7 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20■□□□□ 0.79
COL6A6A6NMZ7 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 MIR4758-201ENST00000577688 71 ntBASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 AC104187.1-201ENST00000607510 612 ntBASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 AC092118.2-201ENST00000613495 667 ntBASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A6A6NMZ7 ALDH1A3-203ENST00000557963 1670 ntBASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms