Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 AC009102.2-201ENST00000606772 1639 ntBASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 AC009299.2-201ENST00000482477 511 ntBASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 AC010997.5-201ENST00000609182 354 ntBASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CPSF4LA6NMK7 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 AC009086.3-201ENST00000623486 1008 ntBASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4LA6NMK7 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 AC092053.2-201ENST00000640557 1818 ntBASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 DUX4L4-201ENST00000566884 1269 ntBASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 AL451085.2-201ENST00000605085 799 ntBASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4LA6NMK7 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4LA6NMK7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.22■□□□□ 0.83
CPSF4LA6NMK7 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4LA6NMK7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CPSF4LA6NMK7 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4LA6NMK7 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4LA6NMK7 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.22■□□□□ 0.83
CPSF4LA6NMK7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.22■□□□□ 0.83
CPSF4LA6NMK7 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.22■□□□□ 0.83
CPSF4LA6NMK7 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.22■□□□□ 0.83
CPSF4LA6NMK7 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.22■□□□□ 0.83
CPSF4LA6NMK7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CPSF4LA6NMK7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
CPSF4LA6NMK7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
CPSF4LA6NMK7 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CPSF4LA6NMK7 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.21■□□□□ 0.83
CPSF4LA6NMK7 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CPSF4LA6NMK7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CPSF4LA6NMK7 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CPSF4LA6NMK7 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CPSF4LA6NMK7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CPSF4LA6NMK7 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
CPSF4LA6NMK7 LINC01960-201ENST00000563759 1884 ntBASIC20.2■□□□□ 0.82
CPSF4LA6NMK7 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.2■□□□□ 0.82
CPSF4LA6NMK7 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CPSF4LA6NMK7 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.2■□□□□ 0.82
CPSF4LA6NMK7 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CPSF4LA6NMK7 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.2■□□□□ 0.82
CPSF4LA6NMK7 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CPSF4LA6NMK7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CPSF4LA6NMK7 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CPSF4LA6NMK7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CPSF4LA6NMK7 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4LA6NMK7 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4LA6NMK7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4LA6NMK7 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4LA6NMK7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4LA6NMK7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CPSF4LA6NMK7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.19■□□□□ 0.82
CPSF4LA6NMK7 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4LA6NMK7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms