Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 MIR1307-201ENST00000408840 149 ntBASIC12.75□□□□□ -0.37
COL28A1Q2UY09 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AL157823.2-201ENST00000452048 669 ntTSL 3 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 RN7SL677P-201ENST00000466970 319 ntBASIC12.75□□□□□ -0.37
COL28A1Q2UY09 RN7SL487P-201ENST00000468140 344 ntBASIC12.75□□□□□ -0.37
COL28A1Q2UY09 YBX1P3-201ENST00000468366 909 ntBASIC12.75□□□□□ -0.37
COL28A1Q2UY09 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 COQ10BP2-201ENST00000513804 724 ntBASIC12.75□□□□□ -0.37
COL28A1Q2UY09 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC112694.1-202ENST00000540985 943 ntBASIC12.75□□□□□ -0.37
COL28A1Q2UY09 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC006504.5-210ENST00000585827 539 ntTSL 4 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC022167.5-201ENST00000636296 1250 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 MIR497HG-202ENST00000572453 3838 ntBASIC12.75□□□□□ -0.37
COL28A1Q2UY09 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC005014.1-201ENST00000432006 2976 ntBASIC12.75□□□□□ -0.37
COL28A1Q2UY09 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 AC012158.1-201ENST00000535684 1366 ntTSL 2 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 HSD3BP1-201ENST00000286193 1111 ntBASIC12.74□□□□□ -0.37
COL28A1Q2UY09 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 RIBC1-203ENST00000414955 1281 ntTSL 2 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 AC005722.1-201ENST00000431878 964 ntBASIC12.74□□□□□ -0.37
COL28A1Q2UY09 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 HNRNPA1P3-201ENST00000440968 551 ntBASIC12.74□□□□□ -0.37
COL28A1Q2UY09 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 SRPK2P-201ENST00000523408 1100 ntBASIC12.74□□□□□ -0.37
COL28A1Q2UY09 KRT127P-201ENST00000547183 433 ntBASIC12.74□□□□□ -0.37
COL28A1Q2UY09 FOS-205ENST00000555242 629 ntTSL 2 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 AL390726.3-201ENST00000567428 635 ntTSL 5 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 AC010319.4-201ENST00000593957 691 ntTSL 3 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms