Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
TM9SF3Q9HD45 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
TM9SF3Q9HD45 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
TM9SF3Q9HD45 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
TM9SF3Q9HD45 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.08■■□□□ 1.12
TM9SF3Q9HD45 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
TM9SF3Q9HD45 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 AC133561.1-201ENST00000568600 2415 ntBASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
TM9SF3Q9HD45 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TM9SF3Q9HD45 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC22.05■■□□□ 1.12
TM9SF3Q9HD45 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 LHPP-203ENST00000392757 840 ntTSL 3 BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 AC144652.1-201ENST00000609974 1624 ntBASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TM9SF3Q9HD45 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 LINC01529-204ENST00000636474 1715 ntBASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 LINC02228-203ENST00000641970 1355 ntBASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 AP005435.1-201ENST00000529293 1178 ntBASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 KRT18P14-201ENST00000534205 1250 ntBASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.03■■□□□ 1.12
TM9SF3Q9HD45 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 GXYLT1P2-201ENST00000433312 1230 ntBASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 TERF1P2-201ENST00000583350 1212 ntBASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 NTF6G-201ENST00000591094 616 ntBASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TM9SF3Q9HD45 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms