Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.61■■□□□ 1.05
LMX1AQ8TE12 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LMX1AQ8TE12 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LMX1AQ8TE12 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.6■■□□□ 1.05
LMX1AQ8TE12 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.6■■□□□ 1.05
LMX1AQ8TE12 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 AL137784.2-201ENST00000607332 1000 ntBASIC21.6■■□□□ 1.05
LMX1AQ8TE12 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 AL353803.4-201ENST00000565882 1934 ntBASIC21.6■■□□□ 1.05
LMX1AQ8TE12 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
LMX1AQ8TE12 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 NTF6G-201ENST00000591094 616 ntBASIC21.59■■□□□ 1.05
LMX1AQ8TE12 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LMX1AQ8TE12 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
LMX1AQ8TE12 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
LMX1AQ8TE12 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LMX1AQ8TE12 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
LMX1AQ8TE12 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.58■■□□□ 1.05
LMX1AQ8TE12 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.58■■□□□ 1.05
LMX1AQ8TE12 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.58■■□□□ 1.05
LMX1AQ8TE12 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.58■■□□□ 1.05
LMX1AQ8TE12 TERF1P2-201ENST00000583350 1212 ntBASIC21.58■■□□□ 1.05
LMX1AQ8TE12 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.04
LMX1AQ8TE12 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
LMX1AQ8TE12 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
LMX1AQ8TE12 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.57■■□□□ 1.04
LMX1AQ8TE12 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.57■■□□□ 1.04
LMX1AQ8TE12 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.57■■□□□ 1.04
LMX1AQ8TE12 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
LMX1AQ8TE12 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LMX1AQ8TE12 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LMX1AQ8TE12 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.56■■□□□ 1.04
LMX1AQ8TE12 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.56■■□□□ 1.04
LMX1AQ8TE12 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
LMX1AQ8TE12 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LMX1AQ8TE12 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
LMX1AQ8TE12 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.56■■□□□ 1.04
LMX1AQ8TE12 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.56■■□□□ 1.04
LMX1AQ8TE12 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
LMX1AQ8TE12 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.56■■□□□ 1.04
LMX1AQ8TE12 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.55■■□□□ 1.04
LMX1AQ8TE12 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.54■■□□□ 1.04
LMX1AQ8TE12 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.54■■□□□ 1.04
LMX1AQ8TE12 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LMX1AQ8TE12 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
LMX1AQ8TE12 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LMX1AQ8TE12 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LMX1AQ8TE12 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LMX1AQ8TE12 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.54■■□□□ 1.04
LMX1AQ8TE12 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.54■■□□□ 1.04
LMX1AQ8TE12 RARRES2P11-201ENST00000635158 484 ntBASIC21.54■■□□□ 1.04
LMX1AQ8TE12 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms