Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
SMC1BQ8NDV3 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SMC1BQ8NDV3 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC26.49■■□□□ 1.83
SMC1BQ8NDV3 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC26.49■■□□□ 1.83
SMC1BQ8NDV3 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC26.49■■□□□ 1.83
SMC1BQ8NDV3 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC26.49■■□□□ 1.83
SMC1BQ8NDV3 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC26.49■■□□□ 1.83
SMC1BQ8NDV3 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC26.49■■□□□ 1.83
SMC1BQ8NDV3 CPT2-209ENST00000636935 803 ntTSL 5 BASIC26.49■■□□□ 1.83
SMC1BQ8NDV3 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SMC1BQ8NDV3 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
SMC1BQ8NDV3 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SMC1BQ8NDV3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SMC1BQ8NDV3 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.47■■□□□ 1.83
SMC1BQ8NDV3 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SMC1BQ8NDV3 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SMC1BQ8NDV3 PARP1-202ENST00000366792 553 ntTSL 3 BASIC26.47■■□□□ 1.83
SMC1BQ8NDV3 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC26.47■■□□□ 1.83
SMC1BQ8NDV3 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
SMC1BQ8NDV3 AL158047.1-201ENST00000445918 881 ntBASIC26.47■■□□□ 1.83
SMC1BQ8NDV3 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
SMC1BQ8NDV3 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SMC1BQ8NDV3 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SMC1BQ8NDV3 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SMC1BQ8NDV3 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC26.46■■□□□ 1.83
SMC1BQ8NDV3 ERN1-208ENST00000606895 2068 ntBASIC26.46■■□□□ 1.83
SMC1BQ8NDV3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
SMC1BQ8NDV3 AL161729.1-201ENST00000604104 1402 ntBASIC26.46■■□□□ 1.83
SMC1BQ8NDV3 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC26.46■■□□□ 1.83
SMC1BQ8NDV3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.45■■□□□ 1.83
SMC1BQ8NDV3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.83
SMC1BQ8NDV3 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
SMC1BQ8NDV3 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SMC1BQ8NDV3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SMC1BQ8NDV3 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SMC1BQ8NDV3 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC26.45■■□□□ 1.82
SMC1BQ8NDV3 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC26.45■■□□□ 1.82
SMC1BQ8NDV3 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC26.45■■□□□ 1.82
SMC1BQ8NDV3 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC26.45■■□□□ 1.82
SMC1BQ8NDV3 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
SMC1BQ8NDV3 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC26.45■■□□□ 1.82
SMC1BQ8NDV3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.45■■□□□ 1.82
SMC1BQ8NDV3 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC26.44■■□□□ 1.82
SMC1BQ8NDV3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.43■■□□□ 1.82
SMC1BQ8NDV3 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC26.43■■□□□ 1.82
SMC1BQ8NDV3 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SMC1BQ8NDV3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SMC1BQ8NDV3 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC26.43■■□□□ 1.82
SMC1BQ8NDV3 AC142381.4-202ENST00000563973 229 ntBASIC26.43■■□□□ 1.82
SMC1BQ8NDV3 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SMC1BQ8NDV3 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC26.43■■□□□ 1.82
SMC1BQ8NDV3 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SMC1BQ8NDV3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SMC1BQ8NDV3 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 RARRES2P4-201ENST00000514074 484 ntBASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 UBE2DNL-204ENST00000602536 740 ntBASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
SMC1BQ8NDV3 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SMC1BQ8NDV3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC26.41■■□□□ 1.82
SMC1BQ8NDV3 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SMC1BQ8NDV3 ADM-205ENST00000528544 586 ntTSL 2 BASIC26.41■■□□□ 1.82
SMC1BQ8NDV3 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC26.41■■□□□ 1.82
SMC1BQ8NDV3 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SMC1BQ8NDV3 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms