Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
NPHP3Q7Z494 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC30.4■■■□□ 2.46
NPHP3Q7Z494 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC30.4■■■□□ 2.46
NPHP3Q7Z494 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC30.4■■■□□ 2.46
NPHP3Q7Z494 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
NPHP3Q7Z494 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
NPHP3Q7Z494 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC30.4■■■□□ 2.46
NPHP3Q7Z494 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP3Q7Z494 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP3Q7Z494 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP3Q7Z494 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP3Q7Z494 TMEM202-AS1-202ENST00000565181 2325 ntBASIC30.39■■■□□ 2.46
NPHP3Q7Z494 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC30.39■■■□□ 2.46
NPHP3Q7Z494 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP3Q7Z494 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC30.39■■■□□ 2.45
NPHP3Q7Z494 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC30.38■■■□□ 2.45
NPHP3Q7Z494 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
NPHP3Q7Z494 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
NPHP3Q7Z494 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC30.38■■■□□ 2.45
NPHP3Q7Z494 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC30.38■■■□□ 2.45
NPHP3Q7Z494 TSPY6P-201ENST00000448518 926 ntBASIC30.38■■■□□ 2.45
NPHP3Q7Z494 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC30.38■■■□□ 2.45
NPHP3Q7Z494 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
NPHP3Q7Z494 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC30.38■■■□□ 2.45
NPHP3Q7Z494 CPT2-209ENST00000636935 803 ntTSL 5 BASIC30.38■■■□□ 2.45
NPHP3Q7Z494 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP3Q7Z494 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP3Q7Z494 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP3Q7Z494 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC30.37■■■□□ 2.45
NPHP3Q7Z494 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC30.37■■■□□ 2.45
NPHP3Q7Z494 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP3Q7Z494 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP3Q7Z494 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP3Q7Z494 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 GUSBP6-202ENST00000438529 1198 ntBASIC30.36■■■□□ 2.45
NPHP3Q7Z494 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 PARP1-210ENST00000629232 477 ntTSL 5 BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP3Q7Z494 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
NPHP3Q7Z494 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC30.35■■■□□ 2.45
NPHP3Q7Z494 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC30.35■■■□□ 2.45
NPHP3Q7Z494 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC30.35■■■□□ 2.45
NPHP3Q7Z494 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
NPHP3Q7Z494 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC30.34■■■□□ 2.45
NPHP3Q7Z494 AC083906.2-201ENST00000511578 360 ntBASIC30.34■■■□□ 2.45
NPHP3Q7Z494 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC30.34■■■□□ 2.45
NPHP3Q7Z494 SMUG1P1-201ENST00000590640 811 ntBASIC30.34■■■□□ 2.45
NPHP3Q7Z494 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC30.34■■■□□ 2.45
NPHP3Q7Z494 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC30.34■■■□□ 2.45
NPHP3Q7Z494 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.34■■■□□ 2.45
NPHP3Q7Z494 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
NPHP3Q7Z494 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
NPHP3Q7Z494 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 SLC7A5P2-201ENST00000553010 536 ntBASIC30.33■■■□□ 2.45
NPHP3Q7Z494 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP3Q7Z494 AC079140.4-201ENST00000507448 529 ntBASIC30.32■■■□□ 2.44
NPHP3Q7Z494 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC30.32■■■□□ 2.44
NPHP3Q7Z494 MAZ-216ENST00000616501 991 ntTSL 5 BASIC30.32■■■□□ 2.44
NPHP3Q7Z494 AC068587.7-201ENST00000641602 218 ntBASIC30.32■■■□□ 2.44
NPHP3Q7Z494 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
NPHP3Q7Z494 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
NPHP3Q7Z494 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
NPHP3Q7Z494 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP3Q7Z494 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP3Q7Z494 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP3Q7Z494 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC30.31■■■□□ 2.44
NPHP3Q7Z494 KLF13-207ENST00000560473 489 ntTSL 3 BASIC30.31■■■□□ 2.44
NPHP3Q7Z494 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC30.31■■■□□ 2.44
NPHP3Q7Z494 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP3Q7Z494 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP3Q7Z494 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP3Q7Z494 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP3Q7Z494 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC30.3■■■□□ 2.44
NPHP3Q7Z494 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
NPHP3Q7Z494 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC30.3■■■□□ 2.44
NPHP3Q7Z494 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC30.3■■■□□ 2.44
NPHP3Q7Z494 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC30.3■■■□□ 2.44
NPHP3Q7Z494 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC30.3■■■□□ 2.44
NPHP3Q7Z494 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC30.3■■■□□ 2.44
NPHP3Q7Z494 TFG-210ENST00000620299 1289 ntTSL 5 BASIC30.3■■■□□ 2.44
NPHP3Q7Z494 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms