Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
CCDC40Q4G0X9 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC40Q4G0X9 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC24.21■■□□□ 1.47
CCDC40Q4G0X9 GUSBP5-201ENST00000418136 578 ntBASIC24.21■■□□□ 1.47
CCDC40Q4G0X9 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC24.21■■□□□ 1.47
CCDC40Q4G0X9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.21■■□□□ 1.47
CCDC40Q4G0X9 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC24.21■■□□□ 1.47
CCDC40Q4G0X9 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC40Q4G0X9 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC24.2■■□□□ 1.47
CCDC40Q4G0X9 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.47
CCDC40Q4G0X9 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.47
CCDC40Q4G0X9 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.47
CCDC40Q4G0X9 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
CCDC40Q4G0X9 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC40Q4G0X9 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC40Q4G0X9 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC24.2■■□□□ 1.46
CCDC40Q4G0X9 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.2■■□□□ 1.46
CCDC40Q4G0X9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC40Q4G0X9 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC40Q4G0X9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC24.2■■□□□ 1.46
CCDC40Q4G0X9 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC24.2■■□□□ 1.46
CCDC40Q4G0X9 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC40Q4G0X9 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC40Q4G0X9 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC40Q4G0X9 AC127496.7-201ENST00000625110 1798 ntBASIC24.19■■□□□ 1.46
CCDC40Q4G0X9 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.19■■□□□ 1.46
CCDC40Q4G0X9 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC24.19■■□□□ 1.46
CCDC40Q4G0X9 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC40Q4G0X9 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
CCDC40Q4G0X9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC24.19■■□□□ 1.46
CCDC40Q4G0X9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC40Q4G0X9 AL117332.1-201ENST00000622628 974 ntBASIC24.19■■□□□ 1.46
CCDC40Q4G0X9 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC40Q4G0X9 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
CCDC40Q4G0X9 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 ECEL1P1-201ENST00000373592 1742 ntBASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 VGF-203ENST00000611537 1622 ntTSL 5 BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC40Q4G0X9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 LINC00526-201ENST00000581067 1875 ntBASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC40Q4G0X9 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC40Q4G0X9 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC40Q4G0X9 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC40Q4G0X9 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC40Q4G0X9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.16■■□□□ 1.46
CCDC40Q4G0X9 GRAMD4P7-201ENST00000578182 1232 ntBASIC24.16■■□□□ 1.46
CCDC40Q4G0X9 AC242852.2-201ENST00000615738 1807 ntBASIC24.16■■□□□ 1.46
CCDC40Q4G0X9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC40Q4G0X9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
CCDC40Q4G0X9 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC24.15■■□□□ 1.46
CCDC40Q4G0X9 LSR-203ENST00000360798 1963 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC40Q4G0X9 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC40Q4G0X9 AC004687.1-201ENST00000579003 1625 ntBASIC24.15■■□□□ 1.46
CCDC40Q4G0X9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC24.15■■□□□ 1.46
CCDC40Q4G0X9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC40Q4G0X9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC40Q4G0X9 AC087742.1-201ENST00000575880 1738 ntBASIC24.15■■□□□ 1.46
CCDC40Q4G0X9 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC40Q4G0X9 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC40Q4G0X9 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC24.14■■□□□ 1.46
CCDC40Q4G0X9 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
CCDC40Q4G0X9 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC40Q4G0X9 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC40Q4G0X9 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC40Q4G0X9 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC40Q4G0X9 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC40Q4G0X9 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
CCDC40Q4G0X9 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC40Q4G0X9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC40Q4G0X9 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC40Q4G0X9 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC40Q4G0X9 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
CCDC40Q4G0X9 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC40Q4G0X9 AL356740.2-201ENST00000601559 647 ntBASIC24.13■■□□□ 1.45
CCDC40Q4G0X9 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC40Q4G0X9 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC24.13■■□□□ 1.45
CCDC40Q4G0X9 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms