Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.17■□□□□ 0.98
COL28A1Q2UY09 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL28A1Q2UY09 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL28A1Q2UY09 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL28A1Q2UY09 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL28A1Q2UY09 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL28A1Q2UY09 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL28A1Q2UY09 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL28A1Q2UY09 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.16■□□□□ 0.98
COL28A1Q2UY09 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL28A1Q2UY09 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
COL28A1Q2UY09 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
COL28A1Q2UY09 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL28A1Q2UY09 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 AC012676.1-201ENST00000574705 1949 ntBASIC21.15■□□□□ 0.98
COL28A1Q2UY09 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 LINC00543-201ENST00000567234 1845 ntBASIC21.15■□□□□ 0.98
COL28A1Q2UY09 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.15■□□□□ 0.98
COL28A1Q2UY09 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.14■□□□□ 0.98
COL28A1Q2UY09 AC133561.1-201ENST00000568600 2415 ntBASIC21.14■□□□□ 0.97
COL28A1Q2UY09 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL28A1Q2UY09 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.14■□□□□ 0.97
COL28A1Q2UY09 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL28A1Q2UY09 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.14■□□□□ 0.97
COL28A1Q2UY09 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
COL28A1Q2UY09 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.14■□□□□ 0.97
COL28A1Q2UY09 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
COL28A1Q2UY09 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.14■□□□□ 0.97
COL28A1Q2UY09 KRT18P61-201ENST00000585825 1298 ntBASIC21.14■□□□□ 0.97
COL28A1Q2UY09 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.14■□□□□ 0.97
COL28A1Q2UY09 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL28A1Q2UY09 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.14■□□□□ 0.97
COL28A1Q2UY09 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.14■□□□□ 0.97
COL28A1Q2UY09 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.13■□□□□ 0.97
COL28A1Q2UY09 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.13■□□□□ 0.97
COL28A1Q2UY09 GPX1P1-201ENST00000388829 606 ntBASIC21.13■□□□□ 0.97
COL28A1Q2UY09 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL28A1Q2UY09 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.13■□□□□ 0.97
COL28A1Q2UY09 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
COL28A1Q2UY09 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL28A1Q2UY09 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
COL28A1Q2UY09 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL28A1Q2UY09 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL28A1Q2UY09 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL28A1Q2UY09 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL28A1Q2UY09 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL28A1Q2UY09 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.12■□□□□ 0.97
COL28A1Q2UY09 LINC01124-201ENST00000409786 2117 ntBASIC21.12■□□□□ 0.97
COL28A1Q2UY09 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL28A1Q2UY09 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.12■□□□□ 0.97
COL28A1Q2UY09 AP005435.1-201ENST00000529293 1178 ntBASIC21.12■□□□□ 0.97
COL28A1Q2UY09 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.12■□□□□ 0.97
COL28A1Q2UY09 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.12■□□□□ 0.97
COL28A1Q2UY09 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.12■□□□□ 0.97
COL28A1Q2UY09 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL28A1Q2UY09 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.12■□□□□ 0.97
COL28A1Q2UY09 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 KRT18P6-201ENST00000555540 1265 ntBASIC21.11■□□□□ 0.97
COL28A1Q2UY09 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL28A1Q2UY09 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.1■□□□□ 0.97
COL28A1Q2UY09 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.1■□□□□ 0.97
COL28A1Q2UY09 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.1■□□□□ 0.97
COL28A1Q2UY09 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL28A1Q2UY09 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.1■□□□□ 0.97
COL28A1Q2UY09 MIR663A-201ENST00000385250 93 ntBASIC21.1■□□□□ 0.97
COL28A1Q2UY09 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL28A1Q2UY09 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.1■□□□□ 0.97
COL28A1Q2UY09 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.1■□□□□ 0.97
COL28A1Q2UY09 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.1■□□□□ 0.97
COL28A1Q2UY09 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL28A1Q2UY09 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL28A1Q2UY09 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 162 ms