Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CLCN3P51790 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC24.37■■□□□ 1.49
CLCN3P51790 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC24.37■■□□□ 1.49
CLCN3P51790 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
CLCN3P51790 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC24.37■■□□□ 1.49
CLCN3P51790 AC104564.3-201ENST00000582367 638 ntBASIC24.37■■□□□ 1.49
CLCN3P51790 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC24.37■■□□□ 1.49
CLCN3P51790 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC24.37■■□□□ 1.49
CLCN3P51790 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC24.36■■□□□ 1.49
CLCN3P51790 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CLCN3P51790 HACD1-201ENST00000326961 773 ntTSL 2 BASIC24.36■■□□□ 1.49
CLCN3P51790 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC24.36■■□□□ 1.49
CLCN3P51790 LHPP-203ENST00000392757 840 ntTSL 3 BASIC24.36■■□□□ 1.49
CLCN3P51790 AC027612.3-201ENST00000413684 1047 ntBASIC24.36■■□□□ 1.49
CLCN3P51790 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC24.36■■□□□ 1.49
CLCN3P51790 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CLCN3P51790 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC24.35■■□□□ 1.49
CLCN3P51790 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CLCN3P51790 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC24.35■■□□□ 1.49
CLCN3P51790 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CLCN3P51790 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC24.35■■□□□ 1.49
CLCN3P51790 AL354811.1-201ENST00000610286 706 ntBASIC24.35■■□□□ 1.49
CLCN3P51790 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CLCN3P51790 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC24.35■■□□□ 1.49
CLCN3P51790 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CLCN3P51790 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CLCN3P51790 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC24.35■■□□□ 1.49
CLCN3P51790 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
CLCN3P51790 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CLCN3P51790 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CLCN3P51790 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CLCN3P51790 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CLCN3P51790 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC24.34■■□□□ 1.49
CLCN3P51790 EI24-211ENST00000534546 1544 ntTSL 2 BASIC24.34■■□□□ 1.49
CLCN3P51790 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC24.34■■□□□ 1.49
CLCN3P51790 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
CLCN3P51790 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
CLCN3P51790 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CLCN3P51790 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
CLCN3P51790 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
CLCN3P51790 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC24.33■■□□□ 1.49
CLCN3P51790 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.33■■□□□ 1.49
CLCN3P51790 RAB43-208ENST00000615093 783 ntTSL 5 BASIC24.33■■□□□ 1.49
CLCN3P51790 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC24.33■■□□□ 1.49
CLCN3P51790 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC24.33■■□□□ 1.49
CLCN3P51790 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CLCN3P51790 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
CLCN3P51790 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
CLCN3P51790 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC24.33■■□□□ 1.48
CLCN3P51790 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
CLCN3P51790 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.32■■□□□ 1.48
CLCN3P51790 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CLCN3P51790 AC105233.4-201ENST00000642045 216 ntBASIC24.32■■□□□ 1.48
CLCN3P51790 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CLCN3P51790 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CLCN3P51790 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.32■■□□□ 1.48
CLCN3P51790 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC24.32■■□□□ 1.48
CLCN3P51790 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CLCN3P51790 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC24.32■■□□□ 1.48
CLCN3P51790 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
CLCN3P51790 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CLCN3P51790 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC24.32■■□□□ 1.48
CLCN3P51790 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CLCN3P51790 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CLCN3P51790 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CLCN3P51790 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CLCN3P51790 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CLCN3P51790 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CLCN3P51790 AC034268.1-201ENST00000441047 882 ntBASIC24.31■■□□□ 1.48
CLCN3P51790 AC092068.2-201ENST00000590491 1708 ntBASIC24.31■■□□□ 1.48
CLCN3P51790 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC24.31■■□□□ 1.48
CLCN3P51790 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
CLCN3P51790 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CLCN3P51790 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC24.31■■□□□ 1.48
CLCN3P51790 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC24.3■■□□□ 1.48
CLCN3P51790 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CLCN3P51790 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CLCN3P51790 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
CLCN3P51790 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.3■■□□□ 1.48
CLCN3P51790 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC24.3■■□□□ 1.48
CLCN3P51790 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CLCN3P51790 DUX4L2-201ENST00000561772 1275 ntBASIC24.3■■□□□ 1.48
CLCN3P51790 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.3■■□□□ 1.48
CLCN3P51790 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC24.3■■□□□ 1.48
CLCN3P51790 DUX4L6-201ENST00000626483 1275 ntBASIC24.3■■□□□ 1.48
CLCN3P51790 DUX4L1-201ENST00000627662 1275 ntBASIC24.3■■□□□ 1.48
CLCN3P51790 DUX4L8-201ENST00000629013 1275 ntBASIC24.3■■□□□ 1.48
CLCN3P51790 DUX4L3-201ENST00000630187 1275 ntBASIC24.3■■□□□ 1.48
CLCN3P51790 DUX4L7-201ENST00000630678 1275 ntBASIC24.3■■□□□ 1.48
CLCN3P51790 DUX4L5-201ENST00000630834 1275 ntBASIC24.3■■□□□ 1.48
CLCN3P51790 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC24.3■■□□□ 1.48
CLCN3P51790 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC24.3■■□□□ 1.48
CLCN3P51790 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CLCN3P51790 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CLCN3P51790 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CLCN3P51790 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
CLCN3P51790 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CLCN3P51790 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.29■■□□□ 1.48
CLCN3P51790 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
CLCN3P51790 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms