Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX3P41225 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SOX3P41225 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX3P41225 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX3P41225 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX3P41225 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX3P41225 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
SOX3P41225 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX3P41225 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
SOX3P41225 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
SOX3P41225 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.67■□□□□ 0.9
SOX3P41225 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX3P41225 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.67■□□□□ 0.9
SOX3P41225 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SOX3P41225 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX3P41225 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX3P41225 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SOX3P41225 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.66■□□□□ 0.9
SOX3P41225 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.66■□□□□ 0.9
SOX3P41225 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SOX3P41225 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SOX3P41225 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.66■□□□□ 0.9
SOX3P41225 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX3P41225 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
SOX3P41225 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.65■□□□□ 0.9
SOX3P41225 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SOX3P41225 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX3P41225 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SOX3P41225 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SOX3P41225 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX3P41225 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.65■□□□□ 0.9
SOX3P41225 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.65■□□□□ 0.9
SOX3P41225 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.65■□□□□ 0.9
SOX3P41225 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.65■□□□□ 0.9
SOX3P41225 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SOX3P41225 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.64■□□□□ 0.9
SOX3P41225 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SOX3P41225 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
SOX3P41225 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
SOX3P41225 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX3P41225 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX3P41225 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SOX3P41225 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX3P41225 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX3P41225 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.64■□□□□ 0.89
SOX3P41225 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.64■□□□□ 0.89
SOX3P41225 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SOX3P41225 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX3P41225 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SOX3P41225 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SOX3P41225 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX3P41225 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX3P41225 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SOX3P41225 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX3P41225 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.63■□□□□ 0.89
SOX3P41225 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SOX3P41225 MIR3181-201ENST00000578512 73 ntBASIC20.63■□□□□ 0.89
SOX3P41225 MIR4767-201ENST00000582827 78 ntBASIC20.63■□□□□ 0.89
SOX3P41225 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.63■□□□□ 0.89
SOX3P41225 AL138724.1-201ENST00000606771 1088 ntBASIC20.63■□□□□ 0.89
SOX3P41225 AC011298.3-201ENST00000615796 283 ntBASIC20.63■□□□□ 0.89
SOX3P41225 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SOX3P41225 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX3P41225 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX3P41225 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SOX3P41225 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SOX3P41225 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX3P41225 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX3P41225 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX3P41225 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX3P41225 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX3P41225 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.62■□□□□ 0.89
SOX3P41225 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.62■□□□□ 0.89
SOX3P41225 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.62■□□□□ 0.89
SOX3P41225 pRNA.6-201ENST00000610482 90 ntBASIC20.62■□□□□ 0.89
SOX3P41225 pRNA.5-201ENST00000612139 90 ntBASIC20.62■□□□□ 0.89
SOX3P41225 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.62■□□□□ 0.89
SOX3P41225 pRNA.11-201ENST00000618423 90 ntBASIC20.62■□□□□ 0.89
SOX3P41225 pRNA.13-201ENST00000619112 90 ntBASIC20.62■□□□□ 0.89
SOX3P41225 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX3P41225 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX3P41225 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX3P41225 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SOX3P41225 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX3P41225 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
SOX3P41225 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
SOX3P41225 AC144652.1-201ENST00000609974 1624 ntBASIC20.61■□□□□ 0.89
SOX3P41225 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX3P41225 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.61■□□□□ 0.89
SOX3P41225 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SOX3P41225 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX3P41225 EDA-201ENST00000338901 1233 ntBASIC20.61■□□□□ 0.89
SOX3P41225 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.61■□□□□ 0.89
SOX3P41225 AL031432.3-201ENST00000607698 485 ntBASIC20.61■□□□□ 0.89
SOX3P41225 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.61■□□□□ 0.89
SOX3P41225 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX3P41225 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SOX3P41225 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX3P41225 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SOX3P41225 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms