Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.7■■□□□ 1.06
HOXC4P09017 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC4P09017 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC4P09017 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.69■■□□□ 1.06
HOXC4P09017 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.69■■□□□ 1.06
HOXC4P09017 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.69■■□□□ 1.06
HOXC4P09017 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC4P09017 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC4P09017 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC4P09017 AC087239.1-201ENST00000622671 572 ntBASIC21.69■■□□□ 1.06
HOXC4P09017 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC4P09017 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.69■■□□□ 1.06
HOXC4P09017 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC4P09017 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC4P09017 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC4P09017 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
HOXC4P09017 AC010141.3-201ENST00000456659 717 ntBASIC21.68■■□□□ 1.06
HOXC4P09017 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.68■■□□□ 1.06
HOXC4P09017 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.68■■□□□ 1.06
HOXC4P09017 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HOXC4P09017 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.68■■□□□ 1.06
HOXC4P09017 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
HOXC4P09017 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
HOXC4P09017 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HOXC4P09017 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.67■■□□□ 1.06
HOXC4P09017 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HOXC4P09017 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
HOXC4P09017 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.67■■□□□ 1.06
HOXC4P09017 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HOXC4P09017 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HOXC4P09017 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.67■■□□□ 1.06
HOXC4P09017 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.67■■□□□ 1.06
HOXC4P09017 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HOXC4P09017 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.67■■□□□ 1.06
HOXC4P09017 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC4P09017 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC4P09017 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC4P09017 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.66■■□□□ 1.06
HOXC4P09017 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.66■■□□□ 1.06
HOXC4P09017 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC4P09017 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.66■■□□□ 1.06
HOXC4P09017 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.66■■□□□ 1.06
HOXC4P09017 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.66■■□□□ 1.06
HOXC4P09017 AC105233.4-201ENST00000642045 216 ntBASIC21.66■■□□□ 1.06
HOXC4P09017 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
HOXC4P09017 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC4P09017 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC4P09017 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
HOXC4P09017 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.65■■□□□ 1.06
HOXC4P09017 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HOXC4P09017 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.65■■□□□ 1.06
HOXC4P09017 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HOXC4P09017 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.65■■□□□ 1.06
HOXC4P09017 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.65■■□□□ 1.06
HOXC4P09017 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.65■■□□□ 1.06
HOXC4P09017 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.65■■□□□ 1.06
HOXC4P09017 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.65■■□□□ 1.06
HOXC4P09017 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
HOXC4P09017 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.65■■□□□ 1.06
HOXC4P09017 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.65■■□□□ 1.06
HOXC4P09017 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HOXC4P09017 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.64■■□□□ 1.06
HOXC4P09017 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HOXC4P09017 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
HOXC4P09017 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HOXC4P09017 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HOXC4P09017 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
HOXC4P09017 AC034268.1-201ENST00000441047 882 ntBASIC21.64■■□□□ 1.05
HOXC4P09017 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
HOXC4P09017 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.64■■□□□ 1.05
HOXC4P09017 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.64■■□□□ 1.05
HOXC4P09017 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
HOXC4P09017 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.64■■□□□ 1.05
HOXC4P09017 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.63■■□□□ 1.05
HOXC4P09017 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
HOXC4P09017 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.63■■□□□ 1.05
HOXC4P09017 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.63■■□□□ 1.05
HOXC4P09017 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HOXC4P09017 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.63■■□□□ 1.05
HOXC4P09017 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HOXC4P09017 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HOXC4P09017 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HOXC4P09017 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
HOXC4P09017 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
HOXC4P09017 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HOXC4P09017 MIR6084-201ENST00000622012 110 ntBASIC21.62■■□□□ 1.05
HOXC4P09017 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.62■■□□□ 1.05
HOXC4P09017 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.62■■□□□ 1.05
HOXC4P09017 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HOXC4P09017 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HOXC4P09017 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
HOXC4P09017 DUSP8P3-201ENST00000399571 1760 ntBASIC21.61■■□□□ 1.05
HOXC4P09017 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
HOXC4P09017 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.61■■□□□ 1.05
HOXC4P09017 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HOXC4P09017 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
HOXC4P09017 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
HOXC4P09017 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
HOXC4P09017 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
HOXC4P09017 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms