Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
SDC3O75056 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.68■■□□□ 1.06
SDC3O75056 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.68■■□□□ 1.06
SDC3O75056 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.68■■□□□ 1.06
SDC3O75056 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.68■■□□□ 1.06
SDC3O75056 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SDC3O75056 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SDC3O75056 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SDC3O75056 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.67■■□□□ 1.06
SDC3O75056 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.67■■□□□ 1.06
SDC3O75056 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.67■■□□□ 1.06
SDC3O75056 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SDC3O75056 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.67■■□□□ 1.06
SDC3O75056 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SDC3O75056 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.67■■□□□ 1.06
SDC3O75056 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.67■■□□□ 1.06
SDC3O75056 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SDC3O75056 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SDC3O75056 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SDC3O75056 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SDC3O75056 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SDC3O75056 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SDC3O75056 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.66■■□□□ 1.06
SDC3O75056 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SDC3O75056 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SDC3O75056 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SDC3O75056 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.66■■□□□ 1.06
SDC3O75056 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SDC3O75056 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SDC3O75056 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SDC3O75056 AC079630.1-202ENST00000618127 1840 ntBASIC21.66■■□□□ 1.06
SDC3O75056 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SDC3O75056 AC004687.1-201ENST00000579003 1625 ntBASIC21.66■■□□□ 1.06
SDC3O75056 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SDC3O75056 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.65■■□□□ 1.06
SDC3O75056 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.65■■□□□ 1.06
SDC3O75056 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SDC3O75056 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.65■■□□□ 1.06
SDC3O75056 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SDC3O75056 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SDC3O75056 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SDC3O75056 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SDC3O75056 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.65■■□□□ 1.06
SDC3O75056 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SDC3O75056 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SDC3O75056 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SDC3O75056 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.64■■□□□ 1.06
SDC3O75056 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.64■■□□□ 1.05
SDC3O75056 AC004812.2-201ENST00000611079 2094 ntBASIC21.64■■□□□ 1.05
SDC3O75056 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SDC3O75056 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SDC3O75056 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.64■■□□□ 1.05
SDC3O75056 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.64■■□□□ 1.05
SDC3O75056 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SDC3O75056 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SDC3O75056 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.64■■□□□ 1.05
SDC3O75056 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SDC3O75056 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.63■■□□□ 1.05
SDC3O75056 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SDC3O75056 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.63■■□□□ 1.05
SDC3O75056 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SDC3O75056 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SDC3O75056 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
SDC3O75056 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.63■■□□□ 1.05
SDC3O75056 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.62■■□□□ 1.05
SDC3O75056 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SDC3O75056 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.62■■□□□ 1.05
SDC3O75056 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.62■■□□□ 1.05
SDC3O75056 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.62■■□□□ 1.05
SDC3O75056 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.62■■□□□ 1.05
SDC3O75056 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SDC3O75056 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
SDC3O75056 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SDC3O75056 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SDC3O75056 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SDC3O75056 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SDC3O75056 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SDC3O75056 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.61■■□□□ 1.05
SDC3O75056 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SDC3O75056 LINC00543-201ENST00000567234 1845 ntBASIC21.61■■□□□ 1.05
SDC3O75056 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SDC3O75056 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.61■■□□□ 1.05
SDC3O75056 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.6■■□□□ 1.05
SDC3O75056 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SDC3O75056 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
SDC3O75056 ABCB10P4-201ENST00000566803 2184 ntBASIC21.6■■□□□ 1.05
SDC3O75056 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SDC3O75056 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.6■■□□□ 1.05
SDC3O75056 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.6■■□□□ 1.05
SDC3O75056 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
SDC3O75056 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.6■■□□□ 1.05
SDC3O75056 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SDC3O75056 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SDC3O75056 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.59■■□□□ 1.05
SDC3O75056 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SDC3O75056 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.59■■□□□ 1.05
SDC3O75056 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.59■■□□□ 1.05
SDC3O75056 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.59■■□□□ 1.05
SDC3O75056 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.59■■□□□ 1.05
SDC3O75056 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms