Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HDAC3O15379 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HDAC3O15379 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
HDAC3O15379 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HDAC3O15379 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HDAC3O15379 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
HDAC3O15379 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.47■■□□□ 1.03
HDAC3O15379 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HDAC3O15379 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.47■■□□□ 1.03
HDAC3O15379 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.47■■□□□ 1.03
HDAC3O15379 PVT1_1.1-201ENST00000615125 194 ntBASIC21.47■■□□□ 1.03
HDAC3O15379 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
HDAC3O15379 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HDAC3O15379 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HDAC3O15379 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
HDAC3O15379 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HDAC3O15379 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
HDAC3O15379 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HDAC3O15379 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.46■■□□□ 1.03
HDAC3O15379 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HDAC3O15379 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.46■■□□□ 1.03
HDAC3O15379 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HDAC3O15379 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
HDAC3O15379 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.46■■□□□ 1.03
HDAC3O15379 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HDAC3O15379 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HDAC3O15379 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.46■■□□□ 1.03
HDAC3O15379 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HDAC3O15379 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.46■■□□□ 1.03
HDAC3O15379 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HDAC3O15379 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HDAC3O15379 SNX5-217ENST00000606557 1087 ntBASIC21.45■■□□□ 1.02
HDAC3O15379 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
HDAC3O15379 LINC01529-204ENST00000636474 1715 ntBASIC21.45■■□□□ 1.02
HDAC3O15379 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.45■■□□□ 1.02
HDAC3O15379 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
HDAC3O15379 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.45■■□□□ 1.02
HDAC3O15379 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HDAC3O15379 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
HDAC3O15379 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HDAC3O15379 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HDAC3O15379 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HDAC3O15379 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.44■■□□□ 1.02
HDAC3O15379 NTF6A-201ENST00000591175 560 ntBASIC21.44■■□□□ 1.02
HDAC3O15379 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.44■■□□□ 1.02
HDAC3O15379 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HDAC3O15379 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HDAC3O15379 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HDAC3O15379 AC026310.3-201ENST00000625186 2373 ntBASIC21.44■■□□□ 1.02
HDAC3O15379 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HDAC3O15379 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HDAC3O15379 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.43■■□□□ 1.02
HDAC3O15379 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.43■■□□□ 1.02
HDAC3O15379 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HDAC3O15379 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.43■■□□□ 1.02
HDAC3O15379 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HDAC3O15379 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
HDAC3O15379 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.42■■□□□ 1.02
HDAC3O15379 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.42■■□□□ 1.02
HDAC3O15379 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
HDAC3O15379 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.42■■□□□ 1.02
HDAC3O15379 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HDAC3O15379 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HDAC3O15379 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HDAC3O15379 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.41■■□□□ 1.02
HDAC3O15379 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
HDAC3O15379 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HDAC3O15379 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
HDAC3O15379 FP325331.1-202ENST00000623531 1380 ntBASIC21.41■■□□□ 1.02
HDAC3O15379 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.41■■□□□ 1.02
HDAC3O15379 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.41■■□□□ 1.02
HDAC3O15379 ABHD17AP5-201ENST00000580133 923 ntBASIC21.41■■□□□ 1.02
HDAC3O15379 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HDAC3O15379 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.41■■□□□ 1.02
HDAC3O15379 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.41■■□□□ 1.02
HDAC3O15379 AC010542.4-201ENST00000563151 1910 ntBASIC21.41■■□□□ 1.02
HDAC3O15379 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.41■■□□□ 1.02
HDAC3O15379 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HDAC3O15379 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HDAC3O15379 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.4■■□□□ 1.02
HDAC3O15379 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HDAC3O15379 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HDAC3O15379 FAM99A-202ENST00000538190 1989 ntBASIC21.4■■□□□ 1.02
HDAC3O15379 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
HDAC3O15379 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.4■■□□□ 1.02
HDAC3O15379 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.4■■□□□ 1.02
HDAC3O15379 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.4■■□□□ 1.02
HDAC3O15379 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
HDAC3O15379 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HDAC3O15379 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HDAC3O15379 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HDAC3O15379 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HDAC3O15379 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
HDAC3O15379 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HDAC3O15379 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
HDAC3O15379 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
HDAC3O15379 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
HDAC3O15379 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
HDAC3O15379 LINC01960-201ENST00000563759 1884 ntBASIC21.39■■□□□ 1.02
HDAC3O15379 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms