Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-1A0A0B4J248 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-1A0A0B4J248 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-1A0A0B4J248 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAV1-1A0A0B4J248 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-1A0A0B4J248 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAV1-1A0A0B4J248 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAV1-1A0A0B4J248 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
TRAV1-1A0A0B4J248 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
TRAV1-1A0A0B4J248 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAV1-1A0A0B4J248 AC131274.2-201ENST00000580697 1507 ntBASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 AGPS-202ENST00000409888 815 ntTSL 4 BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV1-1A0A0B4J248 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-1A0A0B4J248 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-1A0A0B4J248 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV1-1A0A0B4J248 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-1A0A0B4J248 AC060814.1-201ENST00000554326 538 ntBASIC17.25■□□□□ 0.35
TRAV1-1A0A0B4J248 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-1A0A0B4J248 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-1A0A0B4J248 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAV1-1A0A0B4J248 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV1-1A0A0B4J248 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAV1-1A0A0B4J248 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAV1-1A0A0B4J248 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 TUB-203ENST00000534099 1759 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TRAV1-1A0A0B4J248 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV1-1A0A0B4J248 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV1-1A0A0B4J248 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV1-1A0A0B4J248 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAV1-1A0A0B4J248 AC092296.2-201ENST00000589470 999 ntBASIC17.23■□□□□ 0.35
TRAV1-1A0A0B4J248 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV1-1A0A0B4J248 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
TRAV1-1A0A0B4J248 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TRAV1-1A0A0B4J248 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 FEM1AP4-201ENST00000443167 1987 ntBASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV1-1A0A0B4J248 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 Z98882.1-201ENST00000622160 2253 ntBASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 RNF166-209ENST00000567844 633 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV1-1A0A0B4J248 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms