Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC15.22■□□□□ 0.03
SMARCA1P28370 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC15.22■□□□□ 0.03
SMARCA1P28370 AC009133.3-201ENST00000565600 1656 ntTSL 5 BASIC15.22■□□□□ 0.03
SMARCA1P28370 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 LIPC-202ENST00000356113 2161 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SMARCA1P28370 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 AL031666.1-201ENST00000413818 1809 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 AC098934.1-201ENST00000443294 1835 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 GRIA4-210ENST00000527669 2647 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 AL121753.2-201ENST00000624581 1461 ntBASIC15.22■□□□□ 0.03
SMARCA1P28370 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC15.22■□□□□ 0.03
SMARCA1P28370 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SMARCA1P28370 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SMARCA1P28370 GZMH-202ENST00000382548 687 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 DTX3L-202ENST00000383661 687 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC15.22■□□□□ 0.03
SMARCA1P28370 LIMS2-203ENST00000409254 867 ntTSL 3 BASIC15.22■□□□□ 0.03
SMARCA1P28370 RPSAP6-201ENST00000417882 882 ntBASIC15.22■□□□□ 0.03
SMARCA1P28370 OR7E37P-201ENST00000421076 897 ntBASIC15.22■□□□□ 0.03
SMARCA1P28370 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC15.22■□□□□ 0.03
SMARCA1P28370 ASLP1-201ENST00000428790 637 ntBASIC15.22■□□□□ 0.03
SMARCA1P28370 AC010136.1-201ENST00000450996 568 ntTSL 4 BASIC15.22■□□□□ 0.03
SMARCA1P28370 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 RNU1-80P-201ENST00000459500 161 ntBASIC15.22■□□□□ 0.03
SMARCA1P28370 HNRNPA3P6-201ENST00000472163 1006 ntBASIC15.22■□□□□ 0.03
SMARCA1P28370 CDK2AP2P2-201ENST00000478512 367 ntBASIC15.22■□□□□ 0.03
SMARCA1P28370 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC15.22■□□□□ 0.03
SMARCA1P28370 TLE2-205ENST00000586422 389 ntTSL 5 BASIC15.22■□□□□ 0.03
SMARCA1P28370 HKR1-225ENST00000592168 566 ntTSL 4 BASIC15.22■□□□□ 0.03
SMARCA1P28370 AP001462.1-201ENST00000594089 452 ntBASIC15.22■□□□□ 0.03
SMARCA1P28370 GGNBP1-204ENST00000613113 887 ntBASIC15.22■□□□□ 0.03
SMARCA1P28370 AC048382.6-201ENST00000621980 1223 ntBASIC15.22■□□□□ 0.03
SMARCA1P28370 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
SMARCA1P28370 TGM5-207ENST00000622115 2202 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SMARCA1P28370 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
SMARCA1P28370 GUCY1B3-207ENST00000513437 2355 ntTSL 2 BASIC15.22■□□□□ 0.03
SMARCA1P28370 PCDHA5-203ENST00000614258 4248 ntBASIC15.22■□□□□ 0.03
SMARCA1P28370 STAT3-202ENST00000389272 2615 ntTSL 2 BASIC15.22■□□□□ 0.03
SMARCA1P28370 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC15.22■□□□□ 0.03
SMARCA1P28370 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SMARCA1P28370 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 CXorf40B-203ENST00000370406 1653 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 ITFG1-204ENST00000544001 1849 ntTSL 2 BASIC15.22■□□□□ 0.03
SMARCA1P28370 AXIN2-209ENST00000618960 4060 ntTSL 5 BASIC15.22■□□□□ 0.03
SMARCA1P28370 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMARCA1P28370 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 CYP24A1-203ENST00000395955 2227 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 DPF2-202ENST00000415073 2085 ntTSL 2 BASIC15.21■□□□□ 0.03
SMARCA1P28370 ZDHHC4-202ENST00000396706 1942 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SMARCA1P28370 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC15.21■□□□□ 0.03
SMARCA1P28370 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 AC005549.1-201ENST00000579438 1629 ntBASIC15.21■□□□□ 0.03
SMARCA1P28370 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC15.21■□□□□ 0.03
SMARCA1P28370 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC15.21■□□□□ 0.03
SMARCA1P28370 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 FBXO5-201ENST00000229758 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 OR2A25-203ENST00000641663 1741 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
SMARCA1P28370 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
SMARCA1P28370 ALX1-201ENST00000316824 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 RNA5SP84-201ENST00000364740 107 ntBASIC15.21■□□□□ 0.03
SMARCA1P28370 RNA5SP248-201ENST00000365602 127 ntBASIC15.21■□□□□ 0.03
SMARCA1P28370 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC15.21■□□□□ 0.03
SMARCA1P28370 NR1I3-210ENST00000437437 973 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
SMARCA1P28370 AC092896.1-201ENST00000465850 380 ntBASIC15.21■□□□□ 0.03
SMARCA1P28370 AADAC-202ENST00000488869 719 ntTSL 2 BASIC15.21■□□□□ 0.03
SMARCA1P28370 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC15.21■□□□□ 0.03
SMARCA1P28370 GOLGA2P10-201ENST00000550961 817 ntBASIC15.21■□□□□ 0.03
SMARCA1P28370 AC021755.2-201ENST00000559022 461 ntTSL 5 BASIC15.21■□□□□ 0.03
SMARCA1P28370 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC15.21■□□□□ 0.03
SMARCA1P28370 LINC00694-204ENST00000637612 1059 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SMARCA1P28370 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 GAS6-AS2-201ENST00000608651 1952 ntTSL 2 BASIC15.21■□□□□ 0.03
SMARCA1P28370 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
SMARCA1P28370 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMARCA1P28370 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SMARCA1P28370 DDX11L2-201ENST00000437401 1398 ntBASIC15.21■□□□□ 0.02
SMARCA1P28370 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SMARCA1P28370 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SMARCA1P28370 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SMARCA1P28370 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SMARCA1P28370 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms