Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
UPF3AQ9H1J1 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
UPF3AQ9H1J1 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
UPF3AQ9H1J1 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.86■■□□□ 1.57
UPF3AQ9H1J1 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.86■■□□□ 1.57
UPF3AQ9H1J1 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
UPF3AQ9H1J1 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.85■■□□□ 1.57
UPF3AQ9H1J1 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
UPF3AQ9H1J1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
UPF3AQ9H1J1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
UPF3AQ9H1J1 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
UPF3AQ9H1J1 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC24.84■■□□□ 1.57
UPF3AQ9H1J1 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.84■■□□□ 1.57
UPF3AQ9H1J1 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.84■■□□□ 1.57
UPF3AQ9H1J1 RAP2CP1-201ENST00000605103 478 ntBASIC24.84■■□□□ 1.57
UPF3AQ9H1J1 AC080038.1-201ENST00000611274 1154 ntBASIC24.84■■□□□ 1.57
UPF3AQ9H1J1 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC24.84■■□□□ 1.57
UPF3AQ9H1J1 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
UPF3AQ9H1J1 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
UPF3AQ9H1J1 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.83■■□□□ 1.57
UPF3AQ9H1J1 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
UPF3AQ9H1J1 HLA-L-209ENST00000420110 1011 ntBASIC24.83■■□□□ 1.57
UPF3AQ9H1J1 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
UPF3AQ9H1J1 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC24.83■■□□□ 1.57
UPF3AQ9H1J1 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC24.83■■□□□ 1.57
UPF3AQ9H1J1 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
UPF3AQ9H1J1 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
UPF3AQ9H1J1 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.83■■□□□ 1.56
UPF3AQ9H1J1 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC24.82■■□□□ 1.56
UPF3AQ9H1J1 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
UPF3AQ9H1J1 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC24.82■■□□□ 1.56
UPF3AQ9H1J1 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.82■■□□□ 1.56
UPF3AQ9H1J1 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.82■■□□□ 1.56
UPF3AQ9H1J1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC24.82■■□□□ 1.56
UPF3AQ9H1J1 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.82■■□□□ 1.56
UPF3AQ9H1J1 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
UPF3AQ9H1J1 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.81■■□□□ 1.56
UPF3AQ9H1J1 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
UPF3AQ9H1J1 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC24.8■■□□□ 1.56
UPF3AQ9H1J1 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC24.8■■□□□ 1.56
UPF3AQ9H1J1 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
UPF3AQ9H1J1 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
UPF3AQ9H1J1 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
UPF3AQ9H1J1 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
UPF3AQ9H1J1 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
UPF3AQ9H1J1 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
UPF3AQ9H1J1 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
UPF3AQ9H1J1 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
UPF3AQ9H1J1 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.79■■□□□ 1.56
UPF3AQ9H1J1 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
UPF3AQ9H1J1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC24.79■■□□□ 1.56
UPF3AQ9H1J1 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 SHD-204ENST00000599689 1729 ntTSL 5 BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 AP004607.4-201ENST00000530158 1459 ntBASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 CDCA4P2-201ENST00000441182 718 ntBASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 AC137761.2-201ENST00000561729 223 ntBASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 AC145350.3-201ENST00000569033 163 ntBASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.78■■□□□ 1.56
UPF3AQ9H1J1 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
UPF3AQ9H1J1 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
UPF3AQ9H1J1 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms